Flexible Data Import
You can import a range of data formats, including arrays
in separate files and arrays in a single horizontal file. Gene
identification data can be included and merged with array data by
identifying a Unique ID. The program can handle specification of flip-dye
experiments, paired data, and technical replicates. For NIH users, the program provides
an automated import of data from the mAdB database. For Affymetrix users,
the program offers an automated import of common chip data, including
multi-chip data.
Click Here for Screen Shots
|
|
Sophisticated Visualization Tools Evaluate
normalization methods and exclusion criteria using the generic Array vs
Array scatter plots. Obtain preliminary evidence of differential gene
expression using the Phenotype (or Class) scatter plot function. Evaluate
dissimilarity of arrays using the Multi-Dimensional Scaling 3-D rotational
plot function, the rotated 3-D plot can be included in a PowerPoint
presentation. Click Here for Screen Shot
|
|
|
Integrate GeneLists with Bio Data You
can selectively save interesting gene lists derived from hierarchal cluster
analysis and any of the Class Comparison and Class Prediction methods as
text files and as a formatted html report. You can access NCI feature
reports and GenBank directly from the html report output. You can also
import your own gene lists to facilitate your analysis. In addition, you
can annotate your data by accessing the Stanford SOURCE database. Click Here for Screen Shot
|