BRB ArrayTools Message Board Subject Listing

...Date.......... Time ......................................... Subject - Author.................................. 07/04/2008 06:31 .. Experiment descriptor - rows order - Giacomo Diaz 07/02/2008 21:10 .. R running out of memory - Guck Ooi 06/26/2008 17:54 .. Extracting expression data - Tilahun Abebe 06/23/2008 09:30 .. annotation issue - Pedr Jares 06/19/2008 18:13 .. Chiptype - HY 06/19/2008 14:45 .. RE: Error: 'geneNames' is defunct - Supriya Menezes 06/17/2008 17:22 .. Error: 'geneNames' is defunct - David Carter 06/17/2008 12:03 .. RE: Gene 1.0 ST chips - Michael Ngan 06/17/2008 09:10 .. Gene 1.0 ST chips - gabriele bucci 06/10/2008 14:42 .. Affymetrix array processing - Ana Robles 06/04/2008 13:24 .. anova log intensity plugin calcs - D Lepp 06/04/2008 12:12 .. Help: Error during QC analysis - Felix 06/02/2008 14:23 .. RE: v3.7_beta1 vs v3.7_beta2 - Michael Ngan 06/02/2008 13:08 .. RE: Help with testing gene signatur - Ming-Chung Li 06/02/2008 12:35 .. RE: Special character error message - Ming-Chung Li 06/02/2008 10:03 .. v3.7_beta1 vs v3.7_beta2 - Guillermo López 05/29/2008 23:45 .. Special character error message - Richard Tothill 05/29/2008 04:49 .. Help with testing gene signatures - Confused 05/29/2008 03:16 .. Help with testing gene signatures - Confused 05/22/2008 17:07 .. RE: analysis of two GDS files - Michael Ngan 05/21/2008 22:13 .. Time Series Analysis Plug-In - Nick Liu 05/21/2008 18:55 .. RE: List of non-induced genes - Supriya Menezes 05/21/2008 14:13 .. RE: selecting spots on a scatterplot - Supriya Menezes 05/21/2008 13:56 .. RE: Problem importing cel files in 3.7. - Supriya Menezes 05/21/2008 13:43 .. RE: RCOM RExcel in Excel2007 - Supriya Menezes 05/21/2008 08:46 .. RCOM RExcel in Excel2007 - Gerwin Heller 05/21/2008 06:30 .. Problem importing cel files in 3.7. - Gerwin Heller 05/21/2008 04:01 .. RE: problems wih Arraytools v3.7.beta2 - Guillermo López 05/20/2008 16:09 .. selecting spots on a scatterplot - Joseph 05/19/2008 14:00 .. RE: problems wih Arraytools v3.7.beta2 - Supriya Menezes 05/18/2008 12:39 .. RE: BioC download - Guillermo López 05/18/2008 12:13 .. problems wih Arraytools v3.7.beta2 - Guillermo López 05/15/2008 18:48 .. BioC download - David Shames 05/15/2008 04:40 .. analysis of two GDS files - Onur 05/14/2008 12:11 .. List of non-induced genes - Tilahun Abebe 05/07/2008 13:34 .. RE: Importing of over 200 CEL files - Brian High 05/06/2008 09:54 .. Macintosh or Linux? - Michaela 05/05/2008 07:36 .. Gene Affymetrix arrays - Milena 05/02/2008 12:52 .. following last question - Hui-Yi 05/02/2008 10:56 .. errors during annotation - Hui-Yi 05/02/2008 10:21 .. v 3.6 problem - DL 05/02/2008 03:41 .. Survival Risk prediction - David Lam 04/24/2008 10:09 .. Update on CGHTools add-in - Supriya Menezes 04/24/2008 03:57 .. SOM - Dr.T.Rajkumar 04/22/2008 18:29 .. Error in Plug-Ins - Guck Ooi 04/22/2008 04:35 .. Visual Basic Compile error - u.mahalingaraja 04/17/2008 15:54 .. aCGH analyses in BRB AT??? - Andreas 04/16/2008 17:24 .. RE: PAM analysis - Ming-Chung Li 04/15/2008 21:27 .. Gene Set Expression Comparison - Guck Ooi 04/15/2008 00:11 .. PAM analysis - gerdine sanson 04/14/2008 21:28 .. RE: clusterLG crashes - Supriya Menezes 04/14/2008 18:15 .. RE: Array Tools menu in Excel is gone - Mike Ngan 04/14/2008 12:54 .. clusterLG crashes - Paul Cantalupo 04/11/2008 20:38 .. Import Menu for Affymetrix CEL file - Guck Ooi 04/11/2008 09:10 .. Array Tools menu in Excel is gone - Paul Cantalupo 04/11/2008 01:18 .. RE: I can't install BRB ArrayTools - John Huang 04/10/2008 23:55 .. I can't install BRB ArrayTools - John Huang 04/03/2008 10:44 .. RE: PAM CV probabilities - Ming-Chung Li 04/02/2008 11:00 .. RE: Permutation p-value=0? - Supriya Menezes 04/01/2008 15:38 .. PAM CV probabilities - Lies 03/28/2008 11:08 .. Permutation p-value=0? - Angelo 03/26/2008 14:09 .. RE: quantitative PCR analysis in BRB? - Rich Simon 03/17/2008 15:50 .. RE: quantitative PCR analysis in BRB? - David 03/17/2008 07:45 .. RE: Treatment response comparison - Agata 03/11/2008 22:48 .. VISTA user: CheckForPatch error - Bum Yong Kang 03/11/2008 10:12 .. RE: Gene set expression comparison - Rich Simon 03/11/2008 10:08 .. RE: SRP tool with restricted gene l - Rich Simon 03/11/2008 10:05 .. RE: Treatment response comparison - Rich Simon 03/11/2008 10:03 .. RE: Treatment response comparison - Rich Simon 03/10/2008 08:11 .. SRP tool with restricted gene list - Amy Ladd 03/10/2008 05:17 .. Treatment response comparison - Agata 03/06/2008 19:05 .. RE: Detection Call filter - Supriya Menezes 03/06/2008 04:19 .. Detection Call filter - Dadi Jiang 02/28/2008 09:34 .. v3.7 Uploaded - Supriya Menezes 02/26/2008 19:44 .. Gene set expression comparison - ysh 02/25/2008 18:56 .. RE: multidimensional scaling (MDS) - Rich Simon 02/25/2008 18:46 .. RE: Venn Diagram - Rich Simon 02/22/2008 16:48 .. Assessing quality of arrays - Jesse Port 02/22/2008 16:47 .. Assessing quality of arrays - Jesse Port 02/17/2008 14:29 .. Problem with class prediction - Onur Kaya 02/17/2008 14:27 .. Problem with class prediction - Onur Kaya 02/15/2008 07:48 .. Problem to run BRB v3.6.0 with Exce - carol 02/15/2008 07:47 .. - Carol 02/14/2008 22:22 .. error 1004 - Niklas 02/14/2008 15:25 .. RE: Venn Diagram - Ming-Chung Li 02/13/2008 18:12 .. Venn Diagram - G. Ooi 02/13/2008 15:15 .. RE: No genes are found in SAM - Rich Simon 02/13/2008 13:48 .. RE: class prediction - Ming-Chung Li 02/13/2008 10:05 .. class prediction - rumeysa 02/13/2008 05:45 .. multidimensional scaling (MDS) - Giacomo Diaz 02/12/2008 15:08 .. No genes are found in SAM - Clara 02/12/2008 12:03 .. Vista/office 2003 issue - Scott Hudson 02/11/2008 05:30 .. multiple group comparisons - John Meerman 02/08/2008 14:47 .. Fold change & Diff. expressed genes - manisha 02/07/2008 12:19 .. Agilent Upload - Carol Ringelberg 02/04/2008 14:54 .. Rexcel.xla with BRB & Excel 2007? - Arthur David Olson 02/04/2008 11:00 .. quantitative PCR analysis in BRB? - Frank 02/03/2008 12:12 .. Problem with class comparison - Martin O'Donoghue 02/01/2008 11:14 .. RE: PCA in BRB - Ming-Chung Li 02/01/2008 03:52 .. PCA in BRB - david 01/29/2008 14:02 .. RE: Gene filtering verrrry slllow - Supriya Menezes 01/29/2008 12:35 .. - Kim 01/29/2008 12:25 .. RE: multi chip analysis - Supriya Menezes 01/27/2008 14:24 .. problem in importing files - HY 01/27/2008 12:27 .. - havelange Violaine 01/25/2008 16:06 .. Gene filtering verrrry slllow - Chris Coldren 01/25/2008 05:16 .. time series plug in - JP 01/23/2008 12:01 .. Gene ontology - Sige Zou 01/23/2008 10:51 .. multi chip analysis - Philip 01/23/2008 10:50 .. multi chip analysis - 01/21/2008 14:08 .. run-time error '76' - Fred Burns 01/18/2008 20:11 .. Quantile plots for normalization - David Shames 01/18/2008 20:09 .. RE: filtering - David Shames 01/16/2008 19:25 .. filtering - Ryan 01/11/2008 16:20 .. RE: Accessing normalized and filter - Ming-Chung Li 01/11/2008 14:44 .. Accessing normalized and filtered d - Manisha 01/08/2008 14:42 .. Excel 2007 - David Shames 01/08/2008 12:01 .. RE: ANOVA on log intensities result - Ming-Chung Li 01/08/2008 06:44 .. T-test - Milena 01/08/2008 05:34 .. ANOVA on log intensities results - Mikkel Klausen 01/07/2008 17:52 .. Excel 2007 - David Shames 12/19/2007 13:34 .. Broad/MIT pathways - Paul Shaw 12/19/2007 11:56 .. Bayesian CCPredictor correct? - gerdine sanson 12/13/2007 13:26 .. almostRMA - Ju-Seog Lee 12/04/2007 10:16 .. RE: Excel Polynomial vs BRB - Ming-Chung Li 11/29/2007 11:06 .. RE: Excel Polynomial vs BRB - Frank Rose-uh 11/27/2007 15:02 .. Re: Time analysis question - Frank Rose-uh 11/27/2007 14:43 .. Re: Frank Rose-uh - Ming-Chung Li 11/27/2007 14:07 .. - Frank Rose-uh 11/20/2007 21:00 .. red x green in 3.6b3 - gerdine 11/19/2007 13:59 .. Import Affymetrix CEL files - Milena 11/16/2007 04:39 .. Import gpr files - CY Chen 11/05/2007 12:46 .. RE: reset filter log ratio - Rich Simon 11/05/2007 12:26 .. RE: Math behind LS-permutation - Rich Simon 11/05/2007 08:47 .. Math behind LS-permutation - Elina Maaranen 11/01/2007 13:31 .. computing gene filters - Brian Hare 11/01/2007 13:18 .. Arra y Plan - Amir Landi 10/31/2007 12:54 .. RE: reset filter log ratio - Supriya Menezes 10/29/2007 14:54 .. reset filter log ratio - Clara Cheng 10/27/2007 03:43 .. miRNA array normalization - santy 10/26/2007 15:00 .. error occured while importing cell - abhijit basu 10/24/2007 12:26 .. RE: Affymetrix data import - Supriya Menezes 10/23/2007 11:00 .. Affymetrix data import - Mikhail Dozmorov 10/22/2007 14:08 .. brb version 3.6.0 beta 3 - Mikkel Klausen 10/22/2007 12:55 .. error filtering - Jares 10/22/2007 09:52 .. iterative run of class comparison - K. Kim. 10/19/2007 12:24 .. RE: Drug Bank Link - Rich Simon 10/11/2007 00:00 .. RE: microRNA targets - Supriya Menezes 10/10/2007 15:38 .. average arrays - Alejandro Romera 10/09/2007 19:32 .. Installation Problems - Guck Ooi 10/05/2007 16:13 .. microRNA targets - Dimitrios Spentzos 10/04/2007 14:08 .. Reading two-color data - Narendra kaushik 10/04/2007 13:41 .. RE: excel 2007 - Supriya Menezes 10/04/2007 13:29 .. Reading two-color data - Narendra kaushik 10/04/2007 13:29 .. RE: Vista and Excel 2007 - Supriya Menezes 10/04/2007 11:07 .. RE: data filtering and normalization - Supriya Menezes 10/04/2007 11:02 .. NCBI GEO Data Importer - Michael Ngan 10/04/2007 07:09 .. excel 2007 - Balazs Gyorffy 10/04/2007 03:21 .. Vista and Excel 2007 - Casey 10/03/2007 16:02 .. data filtering and normalization - Clara Cheng 10/02/2007 10:33 .. RE: Problem loading datasets - Supriya Menezes 10/02/2007 10:09 .. RE: Another suggestion for Scatterplot - Supriya Menezes 10/01/2007 15:10 .. Problem loading datasets - Guck Ooi 09/27/2007 16:16 .. Another suggestion for Scatterplot - Peter Andrews 09/27/2007 16:00 .. Suggestion for Scatterplot output - Peter Andrews 09/26/2007 03:07 .. RE: Drug Bank Link - Heiner Adams 09/25/2007 15:18 .. RE: Drug Bank Link - Rich Simon 09/25/2007 14:32 .. RE: Drug Bank Link - Rich Simon 09/24/2007 16:54 .. Drug Bank Link - Heiner Adams MD 09/19/2007 08:22 .. 'IStatConnector' fails with MAS 5 - Karl Schilling 09/17/2007 05:12 .. ass comparison between red and gree - eleonora 09/13/2007 21:40 .. gene annotation in v3.6b3 - gerdine sanson 09/12/2007 10:54 .. Loading file formats from GEO - Heiner Adams 09/11/2007 15:44 .. RE: GEO submission - Rich Simon 09/11/2007 15:07 .. RE: log rank stat for KM curves - Rich Simon 09/11/2007 15:01 .. RE: GO analysis - Rich Simon 09/11/2007 14:53 .. RE: Nonreferenced dual-color analysis? - Rich Simon 09/06/2007 18:08 .. Nonreferenced dual-color analysis? - Peter Andrews 09/04/2007 13:38 .. V3.6_Beta_3 Released - Supriya Menezes 08/30/2007 13:40 .. excel vista - john 08/30/2007 05:35 .. GO analysis - Elina Maaranen 08/29/2007 17:40 .. run time error 380 with SAM - dmu 08/28/2007 10:23 .. RE: log rank stat for KM curves - Supriya Menezes 08/27/2007 12:54 .. log rank stat for KM curves - Amy Ladd 08/19/2007 00:16 .. IStatConnector failed - hal berman 08/14/2007 13:56 .. RE: mac use - Supriya Menezes 08/10/2007 16:38 .. GEO submission - Eric Wang 08/08/2007 21:33 .. TF and microRNA in v3.6beta2 - gerdine sanson 08/02/2007 21:54 .. mac use - John 07/31/2007 13:17 .. user gene lists in v3.6 beta 2 - gerdine sanson 07/30/2007 15:45 .. gene set analysis - Uma Chandran 07/27/2007 17:28 .. time series analysis - Dimitrios Spentzos 07/24/2007 16:17 .. Installing BRB 3.6 on Windows Vista - Justiniano 07/24/2007 11:48 .. RE: user gene lists in v3.6 - Supriya Menezes 07/24/2007 11:41 .. RE: KEGG incorrect gene list - Supriya Menezes 07/24/2007 11:21 .. V3.6-Beta_2 Released - Supriya Menezes 07/11/2007 12:56 .. user gene lists in v3.6 - gerdine sanson 07/08/2007 23:56 .. Same Gene on Lists Multiple Times - Matt Anaka 07/06/2007 11:19 .. KEGG incorrect gene list - Aurelien de Reynies 07/03/2007 16:27 .. Human Gene 1.0 ST chips? - Chris Coldren 06/27/2007 14:23 .. RE: problems with source annotation - Supriya Menezes 06/27/2007 11:37 .. problems with source annotation - alejandro 06/26/2007 10:09 .. RE: user gene lists - Supriya Menezes 06/25/2007 11:16 .. user gene lists - gerdine sanson 06/22/2007 12:32 .. GenePix Import data - Veronica 06/22/2007 12:25 .. center genes - alejandro 06/22/2007 11:19 .. comparison: red and green channel - Eric Wang 06/18/2007 13:16 .. RE: Importing Agilent arrays - Supriya Menezes 06/15/2007 06:08 .. Importing Agilent arrays - Guillermo López 06/14/2007 12:04 .. RE: Normal distributed data - Rich Simon 06/13/2007 13:04 .. RE: Imputing missing values - Ming-Chung Li 06/13/2007 11:03 .. Imputing missing values - Ryan 06/12/2007 14:00 .. RE: missing genes - Supriya Menezes 06/12/2007 11:42 .. RE: calculation of log-ratios - Yong Li 06/12/2007 05:57 .. Gene subsets error - Fehrmann 06/11/2007 07:27 .. missing genes - Kirsten Fogd 06/08/2007 10:44 .. RE: Gene ontology comparison - Supriya Menezes 06/08/2007 08:39 .. calculation of log-ratios - Kirsten Fogd 06/08/2007 03:15 .. Gene ontology comparison - Elina Maaranen 06/07/2007 12:46 .. RE: Cluster & Treeview gone? - Supriya Menezes 06/07/2007 12:37 .. RE: detection call filter .cel file - Supriya Menezes 06/07/2007 07:34 .. Normal distributed data - Ann m 06/06/2007 08:25 .. Cluster & Treeview gone? - Ryan van Laar 06/05/2007 20:03 .. detection call filter .cel file - Nicoline van Loenen 06/04/2007 15:21 .. Annotation Disparities - gerdine sanson 05/31/2007 12:56 .. RE: Use BRB in a computer with R > 2.3 - Supriya Menezes 05/31/2007 11:09 .. Runtime error 13 - Bill Dunty 05/31/2007 02:06 .. Use BRB in a computer with R > 2.3 - Alex Sanchez 05/25/2007 11:49 .. RE: Chromosomal Distribution - Supriya Menezes 05/25/2007 11:43 .. RE: bug in version 3.6.0 beta.. - Supriya Menezes 05/25/2007 09:18 .. GenePix data loading - GPR 05/24/2007 16:59 .. bug in version 3.6.0 beta.. - seda 05/24/2007 12:01 .. Chromosomal Distribution - Gerdine Sanson 05/24/2007 09:30 .. RE: Survival Risk Prediction - Dimitrios Spentzos 05/22/2007 13:47 .. RE: Vista windows - Supriya Menezes 05/22/2007 13:34 .. RE: outliers in scatterplot - Supriya Menezes 05/22/2007 12:58 .. RE: filtering average fold change - Supriya Menezes 05/21/2007 11:31 .. Vista windows - Elena 05/20/2007 02:05 .. outliers in scatterplot - Mike Hanson 05/18/2007 12:23 .. RE: Survival Risk Prediction - Rich Simon 05/18/2007 09:35 .. RE: Connecting to server - Carol Ringelberg 05/17/2007 17:11 .. RE: Array Tools 3.6.0 installation - Dimitrios Spentzos 05/17/2007 16:26 .. Connecting to server - Carol Ringelberg 05/16/2007 19:31 .. filtering average fold change - Nicoline 05/16/2007 10:34 .. Class comparison and FDR - Fabrizio 05/16/2007 08:18 .. Anova in BRB ArrayTool 3.5 - Kirsten Fogd 05/15/2007 21:21 .. RE: 3.6 beta question - Supriya Menezes 05/15/2007 15:45 .. Std 3.5.0 pkg problem - D. Mu 05/15/2007 15:45 .. 3.6 beta question - Carol Ringelberg 05/11/2007 15:31 .. RE: Array Tools 3.6.0 installation - Dimitrios Spentzos 05/11/2007 09:00 .. RE: Array Tools 3.6.0 installation - Supriya Menezes 05/10/2007 09:45 .. Excel 2007 - Richard 05/09/2007 15:30 .. RE: Survival Risk Prediction - Dimitrios Spentzos 05/09/2007 15:20 .. RE: Array Tools 3.6.0 installation - Dimitrios Spentzos 05/09/2007 11:19 .. RE: 3.6.0 beta gene identifier problem - Supriya Menezes 05/09/2007 05:54 .. RE: 3.6.0 beta gene identifier problem - Chun-chiu Cheng 05/09/2007 05:46 .. Problem in BRB-ArrayTools 3.5 - Chun-chiu Cheng 05/08/2007 13:16 .. 3.6.0 beta gene identifier problem - Dadi Jiang 05/07/2007 13:30 .. RE: Array Tools 3.6.0 installation - Supriya Menezes 05/06/2007 13:57 .. RE: Array Tools 3.6.0 installation - Eddo van Loenen 05/04/2007 18:29 .. Array Tools 3.6.0 installation - Dimitrios Spentzos 05/04/2007 11:36 .. RE: Survival Risk Prediction - Richard Simon 05/04/2007 10:57 .. RE: Error to import CEL files - Supriya Menezes 05/04/2007 10:52 .. RE: spot flag filtering with values <1 - Michael 05/04/2007 07:49 .. RE: CEL file collation - Paul J. 05/03/2007 05:52 .. Error to import CEL files - Leire 05/03/2007 02:56 .. spot flag filtering with values <1 - Mikkel Klausen 04/27/2007 12:45 .. Survival Risk Prediction - Dimitrios Spentzos 04/26/2007 04:05 .. inconsistant annotation ? - Bin 04/24/2007 12:47 .. RE: survival analysis problem! - Ming-Chung Li 04/24/2007 09:05 .. RE: survival analysis problem! - JHou 04/23/2007 11:21 .. RE: survival analysis problem! - Ming-Chung Li 04/23/2007 10:53 .. survival analysis problem! - JHou 04/20/2007 13:24 .. CEL file collation - Kamana Pillay 04/18/2007 14:02 .. ArrayToolsV3.5 Patch_2 Uploaded - Supriya Menezes 04/17/2007 12:56 .. RE: class comparison - Supriya Menezes 04/17/2007 12:08 .. RE: Pathways analysis comparison - Supriya Menezes 04/17/2007 08:19 .. Pathways analysis comparison - Gerdine Sanson 04/17/2007 04:50 .. class comparison - Anne 04/13/2007 00:23 .. how to insert HG-Focus annotation ? - Bin 04/09/2007 15:30 .. Affy Human 133 plus2 import - Toni Whistler 04/06/2007 11:39 .. Clustering Error - Bill Dunty 03/30/2007 15:54 .. Survival Risk Prediction - Dimitrios Spentzos 03/30/2007 09:23 .. RE: Time series analysis - Dimitrios Spentzos 03/29/2007 15:28 .. Survival Risk Prediction - karina 03/29/2007 13:48 .. RE: Time series analysis - Rich Simon 03/29/2007 11:53 .. Correction:RE: Time series analysis - Supriya Menezes 03/29/2007 10:57 .. RE: Time series analysis - Supriya Menezes 03/28/2007 19:45 .. Time series analysis - Dimitrios Spentzos 03/23/2007 15:13 .. RE: ArrayTools.xla error loading - Mike Rossi 03/23/2007 10:29 .. HT-HGU133A Array import - Norm Allaire 03/21/2007 17:00 .. Problem connection with gcrma - tacc 03/21/2007 16:57 .. - tacc 03/20/2007 14:58 .. RE: one color spots average - Michael Ngan 03/20/2007 06:10 .. re clustering problem - Sherene Loi 03/19/2007 16:09 .. one color spots average - simona 03/19/2007 10:13 .. Average spots - chris 03/14/2007 17:03 .. Importing microarray data - Sarah 03/14/2007 15:23 .. RE: Trouble Installing ArrayTools 3.5.0 - Michael Ngan 03/13/2007 14:55 .. RE: LS or KS? - Rich Simon 03/13/2007 10:11 .. BRB-ArrayToolsv3.5-Patch1 Uploaded - Supriya Menezes 03/08/2007 18:18 .. Trouble Installing ArrayTools 3.5.0 - Guck Ooi 03/07/2007 12:57 .. RE: cluster tree - Yong Li 03/07/2007 10:33 .. cluster tree - ferdn 03/07/2007 06:34 .. LS or KS? - Manuela 03/06/2007 17:09 .. cluster tree - ferdn 03/02/2007 16:01 .. RE: VBA for OpenOffice.org - Michael Ngan 03/02/2007 15:52 .. RE: Better Windows and Office version? - Michael Ngan 03/02/2007 15:51 .. RE: Header Line Selection Problem - Michael Ngan 03/02/2007 12:44 .. Better Windows and Office version? - Gerdine Sanson 03/01/2007 21:14 .. RE: Time series analysis interpreta - Dimitrios Spentzos 03/01/2007 14:12 .. RE: ArrayTools.xla error loading - Supriya Menezes 03/01/2007 13:44 .. RE: Time series analysis interpreta - Ming-Chung Li 03/01/2007 13:16 .. RE: Time series analysis interpreta - Dimitrios Spentzos 03/01/2007 11:40 .. RE: Quality Control - Supriya Menezes 02/28/2007 22:24 .. ArrayTools.xla error loading - Leon 02/28/2007 22:08 .. Quality Control - Danielle 02/28/2007 16:28 .. RE: Time series analysis interpreta - Ming-Chung Li 02/27/2007 17:55 .. Time series analysis interpretation - Dimitrios Spentzos 02/27/2007 17:27 .. VBA for OpenOffice.org - Jonathon Paarlberg 02/27/2007 00:57 .. Header Line Selection Problem - Jonathan Rees 02/20/2007 12:33 .. collating too many samples - Kamana Pillay 02/16/2007 15:08 .. RE: different BR versions - Supriya Menezes 02/16/2007 09:20 .. different BR versions - Jimmy 02/12/2007 17:06 .. RE: Too much samples - Supriya Menezes 02/12/2007 04:01 .. Automatic Installation - gmiga 02/11/2007 12:02 .. Too much samples - simona 02/08/2007 14:16 .. RE: Can BRB Array Tools be used to.... - Michael Ngan 02/08/2007 06:45 .. Can BRB Array Tools be used to.... - Joshua Edwards 01/29/2007 14:39 .. RE: Errors in Group Comparison function - Lisa Wright 01/29/2007 14:17 .. Errors in Group Comparison function - Lisa Wright 01/23/2007 10:27 .. collation - Mike 01/16/2007 10:46 .. parametric p-values - Ming-Chung Li 01/16/2007 09:13 .. Shrinkage vs Empirical Bayesian - Hugues Sicotte 01/16/2007 08:37 .. Shrinkage vs Empirical Bayesian - Hugues Sicotte 01/15/2007 22:07 .. "parametric p-value" - Dadi Jiang 01/12/2007 15:49 .. Reminder of a bug fix in v3.5 beta2 - Ming-Chung Li 12/28/2006 17:47 .. - Dzung 12/28/2006 14:08 .. - Kamana Pillay 12/28/2006 09:18 .. RE: pathway comparison - Deyun Pan 12/26/2006 00:18 .. pathway comparison - ysh 12/22/2006 12:32 .. RE: how to find bacterial pathways - Supriya Menezes 12/21/2006 16:55 .. - Dimitrios Spentzos 12/21/2006 11:30 .. v3.5-Beta2 Uploaded - Supriya Menezes 12/20/2006 18:35 .. how to find bacterial pathways - Tao 12/18/2006 13:18 .. RE: Confounding factor - Rich Simon 12/18/2006 11:03 .. RE: system requirements - Supriya Menezes 12/15/2006 14:48 .. Confounding factor - Amit Agarwal 12/14/2006 22:14 .. system requirements - Victor 12/13/2006 10:36 .. RE: clustering error - Supriya Menezes 12/12/2006 15:30 .. clustering error - Mike Hanson 12/11/2006 15:57 .. RE: Time series analysis - Supriya Menezes 12/11/2006 14:54 .. RE: Time series analysis - Dimitrios Spentzos 12/11/2006 14:26 .. RE: Time series analysis - Supriya Menezes 12/11/2006 11:46 .. RE: Time series analysis - Dimtirios Spentzos 12/06/2006 10:41 .. Nice job! - pier999 12/04/2006 01:15 .. Cannot find file - leisl 12/01/2006 08:18 .. RE: Cannot find the comparison file - Supriya Menezes 11/30/2006 19:13 .. Cannot find the comparison file - Gerdine Sanson 11/30/2006 13:11 .. RE: Plug-in: Analysis of Variance - Rich Simon 11/30/2006 13:04 .. RE: Time series analysis - Rich Simon 11/29/2006 14:55 .. Plug-in: Analysis of Variance - J Robinson 11/29/2006 13:51 .. Confoundingfactors in classcomparis - Amit Agarwal 11/22/2006 20:32 .. Time series analysis - Dimitrios Spentzos 11/22/2006 19:40 .. survival prediction - ysh 11/21/2006 17:23 .. RE: class comparison: global test? - Supriya Menezes 11/21/2006 08:28 .. class comparison: global test? - Anne 11/16/2006 12:31 .. Cdf file error - Tom Lukas 11/14/2006 13:34 .. RE: large N and normalization method - Rich Simon 11/14/2006 13:16 .. RE: About class prediction - Rich Simon 11/14/2006 11:57 .. RE: Error in getCDF(cdfpackagename) - Supriya Menezes 11/12/2006 21:52 .. About class prediction - Huichi 11/08/2006 14:53 .. Error in getCDF(cdfpackagename) - Ju-Seog Lee 11/06/2006 15:09 .. RE: Error in attributes - Supriya Menezes 11/06/2006 14:57 .. RE: large N and normalization method - Supriya Menezes 11/06/2006 10:41 .. Error in attributes - Ryan van Laar 11/05/2006 00:01 .. large N and normalization method - Soon Paik 11/02/2006 11:11 .. RE: survival analysis dataset - Supriya Menezes 11/01/2006 01:17 .. survival analysis dataset - ysh 10/30/2006 12:50 .. RE: Heat Map question - Paul 10/30/2006 11:42 .. RE: Heat Map question - Supriya Menezes 10/25/2006 10:29 .. Heat Map question - Paul Jennings 10/24/2006 19:18 .. RE: Error 1004 + administrator session - Michael Ngan 10/24/2006 13:31 .. RE: Automatic startup - Supriya Menezes 10/24/2006 08:19 .. Automatic startup - Paul 10/23/2006 17:27 .. RE: Predicts opposite survival - Rich Simon 10/20/2006 04:47 .. RE: Error 1004 + administrator session - Jozien Helleman 10/19/2006 12:38 .. BRB- ArrayTools v3.4.1 uploaded - Supriya Menezes 10/05/2006 15:33 .. RE: Importing of over 200 CEL files - Soon Paik 10/04/2006 12:38 .. RE: Values from MDS? - Supriya Menezes 09/30/2006 12:05 .. Values from MDS? - Ryan van Laar 09/27/2006 20:12 .. Run-time error 9 - Nevil J Singh 09/25/2006 14:35 .. RE: Importing of over 200 CEL files - Supriya Menezes 09/25/2006 11:10 .. Importing of over 200 CEL files - Soon Paik 09/21/2006 16:33 .. RE: Pears_vs Eucl_in clusteirng samples - Rich Simon 09/20/2006 08:08 .. Import Wizard for 3.5 beta - RB 09/19/2006 17:53 .. RE: Pears_vs Eucl_in clusteirng samples - Enrico 09/19/2006 13:56 .. RE: Pears_vs Eucl_in clusteirng samples - Rich Simon 09/19/2006 00:41 .. Heatmap colours - JL 09/15/2006 12:29 .. RE: normalized intensity values - Supriya Menezes 09/14/2006 18:59 .. spectral clustring - Zongyou Guo 09/14/2006 05:57 .. Pears_vs Eucl_in clusteirng samples - Enrico 09/12/2006 04:23 .. Run-time error 2147417848(80010108) - Carolina Espina 09/11/2006 20:32 .. RE: Cannot load .CEL files in Array - Guck Ooi 09/11/2006 11:50 .. RE: Cannot load .CEL files in ArrayTool - Supriya Menezes 09/08/2006 08:58 .. normalized intensity values - Gerdine Sanson 09/07/2006 21:58 .. Cannot load .CEL files in ArrayTool - Guck Ooi 09/07/2006 18:57 .. Predicts opposite survival - Jill 09/06/2006 11:20 .. RE: Data Archive on ArrayTool Webpage - Charles 09/04/2006 22:41 .. RE: Run-time error 2147417848(80010108) - Supriya Menezes 09/03/2006 21:18 .. runtime error: '-2147417848(8001010 - Danielle 09/01/2006 17:44 .. Runtime error 76 for BRB - Scott Hudson 09/01/2006 14:49 .. Run-time error 2147417848(80010108) - Carolina Espina 08/31/2006 13:31 .. Excel 2007 Beta - Joseph McElroy 08/31/2006 10:45 .. RE: Test published gene signatures - Rich Simon 08/31/2006 10:41 .. RE: Failure for bioconductor to install - Supriya Menezes 08/30/2006 14:17 .. collating data & survival analysis - KIM 08/23/2006 00:17 .. Failure for bioconductor to install - Bart 08/22/2006 01:49 .. Test published gene signatures - Jill 08/21/2006 10:02 .. RE: Data Archive on ArrayTool Webpage - Rich Simon 08/21/2006 09:53 .. RE: Gene pair class prediction - Rich Simon 08/20/2006 05:26 .. Data Archive on ArrayTool Webpage - DL 08/18/2006 21:42 .. Survival risk prediction - Jill 08/11/2006 05:00 .. RE: Survival analysis: models? - Ramon Diaz-Uriarte 08/11/2006 00:51 .. High resolution images - Jill 08/10/2006 14:12 .. RE: Gene list comparison? - Supriya Menezes 08/10/2006 13:06 .. RE: Gene list comparison? - Don Bottaro 08/08/2006 13:40 .. RE: Dye swap - Rich Simon 08/08/2006 13:20 .. RE: Survival analysis: models? - Rich Simon 08/08/2006 11:23 .. RE: Covariates for Survival Analysis - Supriya Menezes 08/08/2006 03:05 .. Gene pair class prediction - Jill Larsen 08/04/2006 04:56 .. Survival analysis: models? - Ramón Díaz-Uriarte 07/31/2006 12:09 .. RE: Cluster profile plot - Amy Lam 07/25/2006 22:24 .. Covariates for Survival Analysis - Benjamin Tang 07/25/2006 14:23 .. Cluster profile plot - Jennifer 07/15/2006 02:15 .. Print-tip groups - Chun-Chiu Cheng 07/10/2006 19:05 .. RE: Special Format Collation - Supriya Menezes 07/10/2006 05:51 .. RE: GeometricMean of ratio in class 1:0 - Bas Kreike 07/08/2006 01:04 .. Special Format Collation - DL 07/04/2006 00:52 .. Dye swap - YSH 07/03/2006 10:25 .. RE: GeometricMean of ratio in class 1:0 - Rich Simon 06/30/2006 12:33 .. Uploaded v3.4.0a Patch - Supriya Menezes 06/27/2006 22:02 .. Print-tip group - Chun-Chiu Cheng 06/26/2006 20:37 .. RE: BRB-Arraytools 3.4 stable release - Supriya Menezes 06/26/2006 20:27 .. RE: Normalization - Supriya Menezes 06/26/2006 20:17 .. RE: Sample loading - Supriya Menezes 06/26/2006 11:27 .. GeometricMean of ratio in class 1:0 - Bas Kreike 06/23/2006 23:01 .. BRB-Arraytools 3.4 stable release - Chun-Chiu Cheng 06/23/2006 05:49 .. Normalization - SHY 06/23/2006 00:46 .. r memory error - Grant McKenzie 06/22/2006 16:52 .. RE: changing clustering scale bar ? - Amy Lam 06/22/2006 15:13 .. RE: changing clustering scale bar ? - Amy Lam 06/22/2006 00:45 .. Sample loading - Y SG 06/20/2006 17:34 .. v3.4 Stable Release Uploaded - Supriya Menezes 06/20/2006 15:53 .. changing clustering scale bar ? - Bill Dunty 06/19/2006 17:59 .. Error due to 2048 limit - Supriyo 06/19/2006 16:16 .. RE: Number for random variance model - Supriya Menezes 06/17/2006 10:04 .. Number for random variance model - Benjamin Tang 06/16/2006 16:41 .. RE: Paired Anova - John 06/16/2006 15:59 .. RE: Paired Anova - Rich Simon 06/16/2006 14:04 .. ANOVA interaction problem - John 06/15/2006 11:46 .. ANOVA interaction efffects - John 06/14/2006 14:14 .. RE: Importing CEL files - Supriya Menezes 06/14/2006 13:26 .. RE: Run time error 9 - Supriya Menezes 06/14/2006 12:28 .. - Dee Wu 06/14/2006 04:05 .. Run time error 9 - Bas Kreike 06/13/2006 16:09 .. RE: changing java platform - Supriya Menezes 06/13/2006 10:56 .. changing java platform - Gerdine Sanson 06/12/2006 11:11 .. RE: Error in getCDF - Supriya Menezes 06/12/2006 10:14 .. RE: Outlier lines in phenotype scatterp - Supriya Menezes 06/09/2006 15:37 .. Error in getCDF - Jeff Shearstone 06/09/2006 01:11 .. Outlier lines in phenotype scatterp - Jill 06/08/2006 23:50 .. RE: error with class comparison - Supriya Menezes 06/08/2006 23:25 .. RE: Class comparison & regulation - Amy Lam 06/08/2006 15:04 .. Rat 230 chip - Paul Cantalupo 06/08/2006 14:27 .. Rat 230 chip - Paul Cantalupo 06/08/2006 12:57 .. RE: error with class comparison - Guillermo López 06/08/2006 10:08 .. Class comparison and SAM - Fa 06/07/2006 16:20 .. RE: error with class comparison - Supriya Menezes 06/07/2006 15:27 .. Are anybody install de GSEA module - Florentino Sanchez-Garcia 06/07/2006 15:20 .. RE: error with class comparison - Florentino Sanchez-Garcia 06/07/2006 15:05 .. RE: error with class comparison - Florentino Sanchez-Garcia 06/07/2006 13:33 .. error with class comparison - Guillermo López 06/06/2006 12:01 .. Paired Anova - Joseph McElroy 06/05/2006 11:30 .. RE: Problems in class comparison - Supriya Menezes 05/31/2006 11:26 .. print tip - Fa 05/31/2006 11:03 .. Best approach to continuous vars? - Kasia Bryc 05/30/2006 05:00 .. RE: Problems in class comparison - Inmaculada Ibanez 05/30/2006 04:50 .. class comparisson error - Inmaculada Ibanez 05/27/2006 00:20 .. RE: Class comparison & regulation - Krzysztof 05/25/2006 10:59 .. RE: Gene differentially expressed - Supriya Menezes 05/24/2006 16:44 .. RE: Class comparison & regulation - Amy Lam 05/24/2006 14:45 .. RE: Class comparison & regulation - Supriya Menezes 05/24/2006 14:05 .. RE: Filtering flagged spots - Supriya Menezes 05/22/2006 15:14 .. Gene differentially expressed - Fabrizio 05/22/2006 13:28 .. Class comparison & regulation - Krzysztof 05/19/2006 14:52 .. Filtering flagged spots - Rob Alba 05/18/2006 09:40 .. RE: Problems in class comparison - Supriya Menezes 05/16/2006 23:29 .. Problems in class comparison - gerdine sanson 05/16/2006 10:28 .. RE: Survival analysis - Ming-Chung Li 05/15/2006 21:16 .. RE: Survival analysis - yanf S 05/15/2006 09:46 .. RE: Survival analysis - Ming-Chung Li 05/15/2006 01:22 .. Survival analysis - Yanf S 05/10/2006 19:31 .. Class Comparisson - problems - Heloisa 05/10/2006 10:30 .. RE: Time series analysis - Ming-Chung Li 05/10/2006 05:42 .. Time series analysis - Tan Mei Lan 05/08/2006 14:33 .. RE: batch factor - Rich Simon 05/08/2006 13:27 .. RE: MDS plot - Supriya Menezes 05/08/2006 09:48 .. RE: Importing Affy CHP files into BRB - Supriya Menezes 05/08/2006 09:29 .. RE: quantitative trait analysis - Supriya Menezes 05/06/2006 03:38 .. Importing Affy CHP files into BRB - Tan Mei Lan 05/05/2006 17:56 .. MDS plot - Nijaguna Prasad 05/05/2006 13:16 .. RE: analyzing dual-channel as one - Rich Simon 05/03/2006 10:02 .. batch factor - 05/02/2006 17:37 .. quantitative trait analysis - Chris Coldren 05/02/2006 13:06 .. RE: how to cite this tool in publicatio - Supriya Menezes 05/02/2006 11:39 .. how to cite this tool in publicatio - zongyou 04/29/2006 17:25 .. RE: Error when using data import wizard - Supriya Menezes 04/28/2006 17:36 .. Can't Install BRB under WinXP x64 - Carleton Garrett 04/28/2006 16:33 .. Error in BRB array tool - Prasad 04/28/2006 16:05 .. Error when using data import wizard - Lee 04/28/2006 13:32 .. RE: Publication Help - Supriya Menezes 04/28/2006 13:24 .. analyzing dual-channel as one - gerdine sanson 04/28/2006 13:15 .. RE: Gene list comparison? - Supriya Menezes 04/28/2006 09:35 .. svm error massage - Bas Kreike 04/27/2006 17:02 .. RE: PAM in BRB Array Tools - Ming-Chung Li 04/26/2006 15:29 .. Publication Help - Bill Dunty 04/26/2006 15:17 .. RE: PAM in BRB Array Tools - Lee 04/26/2006 11:18 .. Gene list comparison? - Lisa Wright 04/25/2006 23:02 .. RE: Problem in Loading Data - Supriya Menezes 04/25/2006 13:23 .. Problem in Loading Data - Harjit Sehgal 04/24/2006 18:01 .. Windows XP Professional x64 - Carleton Garrett 04/24/2006 14:25 .. RE: class comparison - inverted results - Supriya Menezes 04/23/2006 19:50 .. class comparison - inverted results - Ben Tang 04/19/2006 11:26 .. RE: Chip limit in 3.4B2? - Michael Ngan 04/18/2006 15:21 .. Chip limit in 3.4B2? - Chris Coldren 04/18/2006 03:08 .. Error when displaying data - Gert Attard 04/17/2006 09:36 .. RE: differences in ANOVA tests - Supriya Menezes 04/13/2006 11:52 .. RE: pb running class comparison - Feugeas 04/11/2006 14:54 .. RE: New Version - Dimitrios Spentzos 04/07/2006 16:45 .. RE: New Version - Rich Simon 04/07/2006 09:17 .. differences in ANOVA tests - Jo Hardin 04/06/2006 16:42 .. class comparison - inverted results - Jacqueline Abranches 04/06/2006 11:29 .. RE: pb running class comparison - Supriya Menezes 04/05/2006 17:47 .. pb running class comparison - jean paul 04/03/2006 14:14 .. RE: HG-U133A_2 - DESSEN Philippe 04/03/2006 09:51 .. RE: HG-U133A_2 - Supriya Menezes 04/03/2006 09:09 .. RE: Error during GO Expression Comp. - Supriya Menezes 03/31/2006 12:58 .. HG-U133A_2 - DESSEN Philippe 03/30/2006 09:31 .. Error during GO Expression Comp. - Paul Cantalupo 03/30/2006 02:30 .. normalisation with genepix data - Gert Attard 03/29/2006 14:06 .. RE: PAM in BRB Array Tools - Supriya Menezes 03/28/2006 12:33 .. PAM in BRB Array Tools - Dushanthi Pinnaduwage 03/27/2006 12:52 .. "Zoom and recolor" error message - Dimitrios Spentzos 03/23/2006 17:31 .. RE: Combining multiple projects - Supriya Menezes 03/23/2006 14:55 .. RE: Phenotype Scatterplot problem - Amy Lam 03/23/2006 14:44 .. RE: Another Phenodata problem - Amy Lam 03/23/2006 14:26 .. RE: Execel error after loading BRB - Supriya Menezes 03/22/2006 04:00 .. erreor - payman hanifi-moghaddam 03/21/2006 12:23 .. Combining multiple projects - Paul Cantalupo 03/21/2006 11:03 .. New Version - Dimitrios Spentzos 03/21/2006 10:26 .. Combining multiple projects - Paul Cantalupo 03/20/2006 17:14 .. RE: Another Phenodata problem - kirk 03/20/2006 15:48 .. RE: array normalization - Supriya Menezes 03/20/2006 15:12 .. RE: array normalization - Dimitrios Spentzos 03/20/2006 12:15 .. RE: Phenotype Scatterplot problem - Supriya Menezes 03/20/2006 12:03 .. RE: Another Phenodata problem - Supriya Menezes 03/20/2006 11:52 .. RE: array normalization - Supriya Menezes 03/20/2006 11:36 .. RE: Execel error after loading BRB - Supriya Menezes 03/20/2006 11:06 .. RE: Anova model - Ming-Chung Li 03/17/2006 21:58 .. v3.4.0-beta_2 Uploaded - Supriya Menezes 03/17/2006 18:51 .. Anova model - Maryam 03/17/2006 16:20 .. BRBArrayTools v3.3.1 Uploaded - Supriya Menezes 03/17/2006 12:53 .. Another Phenodata problem - Kirk 03/16/2006 19:29 .. Phenotype Scatterplot problem - Cecilia 03/16/2006 11:41 .. array normalization - Dimitrios Spentzos 03/15/2006 16:18 .. Run-time error - Kellie Archer 03/15/2006 11:12 .. RE: Illumina data - Filemon Tan 03/10/2006 17:19 .. Execel error after loading BRB - Soonmyung Paik 03/06/2006 13:57 .. RE: Q. regardingMicroarray Expt set-up: - Rich Simon 03/05/2006 16:21 .. Error - Farhad 03/02/2006 16:44 .. RE: Illumina data - Rich Simon 03/02/2006 15:03 .. 'affy' package method calls - Paul Cantalupo 03/02/2006 14:43 .. RE: 'affy' package method calls - Supriya Menezes 03/02/2006 14:30 .. RE: Problem with multiple probesets - Rich Simon 03/02/2006 13:55 .. 'affy' package method calls - Paul Cantalupo 03/01/2006 16:35 .. Problem with R version 2.2.0 - Lidia Hernandez 03/01/2006 12:56 .. New group for Statisticians. Join - Madan Gopal Kundu 03/01/2006 11:29 .. RE: Radomized variance model failes - Supriya Menezes 02/28/2006 15:07 .. Q. regardingMicroarray Expt set-up: - Heather 02/27/2006 20:33 .. Radomized variance model failes - Hani Ajus 02/27/2006 11:23 .. run-time error - sang-won park 02/25/2006 21:06 .. Problem with multiple probesets - Enrico 02/22/2006 14:12 .. Error in the apply filter function - Grace O'Gorman 02/22/2006 13:19 .. Illumina data - Filemon Tan 02/22/2006 10:20 .. RE: Bug with R ? - Supriya Menezes 02/22/2006 10:14 .. RE: Too many files? - Ryan 02/22/2006 10:09 .. RE: Too many files? - Supriya Menezes 02/22/2006 03:30 .. Bug with R ? - DESSEN Philippe 02/21/2006 11:11 .. Bug encountered - Lisa Wright 02/21/2006 10:36 .. Bug encountered - Lisa Wright 02/21/2006 08:42 .. Too many files? - Ryan van Laar 02/18/2006 21:57 .. different slide prints - Gerdine Sanson 02/17/2006 10:54 .. RE: Optimize over alpha grid - Supriya Menezes 02/16/2006 12:01 .. Optimize over alpha grid - Andrej-Nikolai Spiess 02/15/2006 13:48 .. RE: GO annotation for other species? - Supriya Menezes 02/13/2006 18:48 .. Survival Risk Prediction f/u - Dimitrios Spentzos 02/13/2006 14:24 .. Survival risk prediction problem - Dimitrios Spentzos 02/10/2006 14:31 .. GO annotation for other species? - Oliver Homann 02/09/2006 16:02 .. CDF environment - David 02/09/2006 08:58 .. RE: BRB 3.4 - Dimitrios Spentzos 02/08/2006 13:48 .. RE: BRB 3.4 - Dimitrios Spentzos 02/08/2006 12:53 .. RE: BRB 3.4 - Supriya Menezes 02/08/2006 12:34 .. RE: Update CDF environment - Supriya Menezes 02/06/2006 13:06 .. RE: CDF environment - Supriya Menezes 02/06/2006 10:27 .. CDF environment - Jacob 02/06/2006 09:55 .. Cannot read .cel - Jacob Brown 02/03/2006 15:01 .. BRB 3.4 - Dimitrios Spentzos 02/02/2006 18:01 .. fold change - babru 02/02/2006 14:00 .. Time Series - Amelia 02/02/2006 12:59 .. RE: Problems running Class comparison - Supriya Menezes 02/02/2006 04:59 .. Problems running Class comparison - Leire 02/01/2006 13:26 .. RE: access to data - Supriya Menezes 02/01/2006 12:55 .. RE: problems running SAM - Supriya Menezes 02/01/2006 12:34 .. RE: Info on KORN - Supriya Menezes 02/01/2006 05:07 .. access to data - Patrick De Boever 02/01/2006 04:49 .. problems running SAM - Patrick De Boever 01/31/2006 11:19 .. Info on KORN - Paul Leo 01/31/2006 06:12 .. RE: Data import wizard bug? - Richard Williams 01/31/2006 05:48 .. RE: Data import wizard bug? - Richard Williams 01/27/2006 12:28 .. RE: Annotations not matching Affymetrix - Michael Ngan 01/26/2006 12:13 .. Export problem in Treeview - Kin 01/26/2006 11:04 .. Annotations not matching Affymetrix - Paul Cantalupo 01/26/2006 10:25 .. RE: color plots and clustering - Supriya Menezes 01/25/2006 13:48 .. RE: Problem with Class Comparison - Supriya Menezes 01/25/2006 12:20 .. color plots and clustering - Dimitrios Spentzos 01/24/2006 17:20 .. RE: Data import wizard bug? - Michael Ngan 01/24/2006 15:30 .. Problem with Class Comparison - Enrico 01/23/2006 14:10 .. Data import wizard bug? - Richard Williams 01/23/2006 07:33 .. RE: automatic update - Michael Baron 01/20/2006 17:26 .. Array comparison - Sven Klaschik 01/19/2006 12:20 .. RE: automatic update - Amy Lam 01/19/2006 10:14 .. automatic update - Michael D. Baron PhD 01/18/2006 11:32 .. RE: Cannot Connect to the BRB Server - Michael Ngan 01/17/2006 12:00 .. RE: Between groups of arrays versus SAM - Rich Simon 01/16/2006 18:14 .. Cannot Connect to the BRB Server - Bronwen 01/16/2006 10:00 .. RE: problems with Clustering - Supriya Menezes 01/13/2006 16:53 .. problems with Clustering - Haiyan Yang 01/13/2006 09:38 .. Between groups of arrays versus SAM - U Chandran 01/12/2006 11:31 .. class comparison v SAM - U Chandran 01/10/2006 22:42 .. Cannot Import Affymetrix Annotation - Bronwen 01/07/2006 16:14 .. Can't Load BRB Array Tools 3.3 - Lisa Lit 01/04/2006 04:15 .. RE: Gene enrichment on paired analysis - Xu Jerry 12/30/2005 16:34 .. Gene enrichment on paired analysis - Amy Lam 12/29/2005 12:25 .. RE: Making your own gene set - Supriya Menezes 12/29/2005 11:46 .. RE:question on the class comparison - Supriya Menezes 12/28/2005 08:41 .. - Jerry Xu 12/27/2005 22:14 .. - Leo 12/27/2005 05:58 .. Making your own gene set - jimmy pramana 12/21/2005 13:37 .. RE: Confounding factors - Supriya Menezes 12/21/2005 10:08 .. RE: MvA plot and comparing BRB + S-Plus - Martin O'Donoghue 12/21/2005 05:28 .. Confounding factors - Gerdine Sanson 12/16/2005 13:18 .. RE: MvA plot and comparing BRB + S-Plus - Rich Simon 12/16/2005 12:48 .. question about Exp Description, - ling 12/14/2005 15:56 .. RE: ERROR in class comparision between - ling 12/14/2005 12:17 .. RE: ERROR in class comparision between - ling tang 12/14/2005 11:31 .. RE: ERROR in class comparision between - Supriya Menezes 12/14/2005 11:23 .. RE: MvA plot and comparing BRB + S-Plus - Martin O'Donoghue 12/13/2005 17:33 .. ERROR in class comparision between - Ling Tang 12/13/2005 16:58 .. RE: MvA plot and comparing BRB + S-Plus - Rich Simon 12/13/2005 10:00 .. Error message - Narendra Kaushik 12/13/2005 05:52 .. RE: MvA plot and comparing BRB + S-Plus - Martin O'Donoghue 12/13/2005 05:43 .. RE: MvA plot and comparing BRB + S-Plus - Martin O'Donoghue 12/12/2005 09:45 .. RE: installation aborted - Supriya Menezes 12/12/2005 08:32 .. installation aborted - Christiane Nerz 12/11/2005 17:23 .. Problems with SAM - Craig Pennell 12/08/2005 13:32 .. IStatConnector Error- using Rv2.2.0 - Supriya Menezes 12/07/2005 08:15 .. Help - Michele 12/06/2005 13:06 .. RServer.xla error - Aneta Valova 12/06/2005 12:44 .. Runtime error - Myong-Hee Sung 12/06/2005 01:11 .. runtime error - Albert Guo 12/01/2005 10:37 .. RE: MvA plot and comparing BRB + S-Plus - Richard Simon 11/30/2005 17:06 .. RE: Problems annotating Aff E.Coli - Michael Ngan 11/30/2005 13:54 .. RE: Problems annotating Aff E.Coli - Eric Mintz 11/30/2005 13:49 .. Survey Query RE:Automatic Data Impo - Supriya Menezes 11/30/2005 13:49 .. Problems annotating Aff E.Coli dat - Eric Mintz 11/30/2005 13:44 .. Problems annotating Aff E.Coli dat - Eric Mintz 11/29/2005 16:19 .. RE: Excel 12 - Michael Ngan 11/29/2005 07:13 .. MvA plot and comparing BRB + S-Plus - Martin O'Donoghue 11/21/2005 12:26 .. Excel 12 - Rick Anthony 11/21/2005 11:37 .. RE: bug? - Michael Ngan 11/21/2005 11:35 .. RE: character limit for header line?? - Michael Ngan 11/18/2005 11:48 .. RE: GO Tool not found in ArrayTools men - Amy Lam 11/17/2005 22:43 .. character limit for header line?? - Jo Hardin 11/17/2005 11:11 .. GO Tool not found in ArrayTools men - Paul Cantalupo 11/16/2005 15:38 .. bug? - tcccst 11/15/2005 17:27 .. CheckForPatch() Error - Michael Ngan 11/15/2005 12:48 .. RE: Auto-Load - Supriya Menezes 11/14/2005 16:37 .. Auto-Load - Nicko 11/14/2005 16:24 .. RE: normalize by batch or experiment? - Rich Simon 11/10/2005 10:34 .. RE: regd fold changes - Supriya Menezes 11/09/2005 21:31 .. normalize by batch or experiment? - todd nick 11/08/2005 23:06 .. regd fold changes - suresh 11/08/2005 14:10 .. RE: Thanks for the Stable Version - Supriya Menezes 11/08/2005 13:35 .. Thanks for the Stable Version - Xiaozhong Yu 11/08/2005 12:00 .. RE: cannot run Excel - Amy Lam 11/06/2005 17:14 .. cannot run Excel - Guoyang Wang 11/03/2005 13:50 .. v3.3.0 Stable Release now available - Supriya Menezes 10/25/2005 14:16 .. Multivariate Perm Test - Rich Simon 10/19/2005 10:24 .. RE: LS score - Dimitrios Spentzos 10/18/2005 11:49 .. RE: LS score - Rich Simon 10/18/2005 07:25 .. Run time error 76 when starting BRB - Frank Staib 10/17/2005 12:15 .. LS score - Dimitrios Spentzos 10/17/2005 10:58 .. RE: Large cohort analysis - Supriya Menezes 10/14/2005 18:07 .. PAM Excel error - Cris. 10/14/2005 17:54 .. Large cohort analysis - Gaorav Gupta 10/12/2005 14:19 .. RE: More than 2 Affymetrix chip types - Michael Ngan 10/12/2005 00:17 .. More than 2 Affymetrix chip types - DL 10/10/2005 11:01 .. RE: Error in intersect genelists - Supriya Menezes 10/07/2005 14:42 .. Error in intersect genelists - Gerdine 10/05/2005 09:30 .. RE: Greedy pairs - Rich Simon 09/30/2005 14:51 .. RE: Greedy pairs - Bob Parkes 09/30/2005 12:58 .. RE: Greedy pairs - Rich Simon 09/30/2005 12:48 .. RE: SAM - Rich Simon 09/30/2005 12:12 .. Greedy pairs - Bob Parkes 09/29/2005 01:34 .. RE: SAM - DL 09/27/2005 12:37 .. RE: SAM - Rich Simon 09/27/2005 10:02 .. RE: SAM - CD 09/27/2005 09:30 .. TimeSeries PlugIn - CD 09/26/2005 04:03 .. SAM - DL 09/23/2005 13:15 .. ANOVA - CD 09/21/2005 10:13 .. RE: prit-tip errors - Supriya Menezes 09/20/2005 09:27 .. print-tip error message - gerdine sanson 09/20/2005 09:23 .. prit-tip errors - gerdine sanson 09/11/2005 07:39 .. Problem with genepix import - Alex Sánchez 09/08/2005 13:17 .. RE: pathway comparison - Bob Parkes 09/08/2005 09:06 .. BRB-ArrayTools v3.3.0-Beta_3a(Patch - Supriya Menezes 09/06/2005 15:12 .. RE: Significance testing - Amy Lam 09/06/2005 15:04 .. RE: Probe Replication - Supriya Menezes 09/02/2005 17:33 .. RE: checkforpatch function error - Amy Lam 09/02/2005 17:22 .. RE: scatterplot FoldDiff column - Amy Lam 09/02/2005 17:16 .. RE: Probe Replication - Amy Lam 09/02/2005 17:14 .. RE: checkforpatch function error - Amy Lam 09/02/2005 12:01 .. RE: pathway comparison - Bob Parkes 09/01/2005 16:09 .. scatterplot FoldDiff column - Michael Hanson 09/01/2005 13:45 .. Probe Replication - Alasdair Hunter 09/01/2005 12:58 .. checkforpatch function error - Sergio 08/30/2005 17:19 .. RE: EvaluateNoReturn Error - Joseph 08/30/2005 14:51 .. Significance testing - Prasad 08/30/2005 12:58 .. RE: Reference design and dye swaps - Rich Simon 08/29/2005 14:09 .. Reference design and dye swaps - Kieran Meade 08/29/2005 12:55 .. EvaluateNoReturn Error - Joseph Brown 08/29/2005 10:43 .. RE: Download from GO database problem - Supriya Menezes 08/29/2005 09:59 .. RE: Gene subseting problem - Supriya Menezes 08/26/2005 21:14 .. Gene subseting problem - Dimitrios Spentzos 08/25/2005 15:30 .. RE: Download from GO database problem - Prasad 08/25/2005 13:37 .. RE: What are these 'filter' columns? - Supriya Menezes 08/25/2005 12:03 .. RE: What are these 'filter' columns? - Jiang 08/24/2005 16:25 .. RE: What are these 'filter' columns? - Supriya Menezes 08/24/2005 10:14 .. What are these 'filter' columns? - Jiang 08/11/2005 11:13 .. Error messages - Narendra kaushik 08/10/2005 21:32 .. Download from GO database problem - Sergio 08/10/2005 11:12 .. RE: ClassComparison Error - Marjoke Heneweer 08/09/2005 16:31 .. BRB-ArrayTools Version 3.3.0-Beta_3 - Supriya Menezes 08/09/2005 14:38 .. housekeeping gene normalization - Lin Zeng 08/04/2005 11:11 .. RE: genepix data import - Supriya Menezes 08/03/2005 15:15 .. RE: install troubleshoot-Resolved - Supriya Menezes 08/03/2005 11:21 .. genepix data import - Lin Zeng 08/02/2005 14:05 .. install troubleshoot - Leslie Mounkes 07/27/2005 15:55 .. RE: 2 possible bugs found - Supriya Menezes 07/27/2005 14:44 .. 2 possible bugs found - Jo Hardin 07/26/2005 15:47 .. averaging over genes - Jo Hardin 07/26/2005 15:33 .. RE: PAM error - Jo Hardin 07/26/2005 09:25 .. RE: PAM error - Supriya Menezes 07/25/2005 19:32 .. PAM error - Jo Hardin 07/22/2005 14:48 .. RE: annotation file not included in BRB - Michael 07/21/2005 17:05 .. Subset Data Error - Frank 07/21/2005 17:01 .. RE: affy import single file hangs - Supriya Menezes 07/21/2005 16:46 .. RE: annotation file not included in BRB - Supriya Menezes 07/20/2005 14:57 .. annotation file not included in BRB - Jennifer McLarnan 07/20/2005 14:51 .. affy import single file hangs - Chris Coldren 07/11/2005 17:18 .. RE: error on prediction options - Supriya Menezes 07/11/2005 17:01 .. RE: unable to use Genelists - Supriya Menezes 07/11/2005 15:29 .. error on prediction options - zhichang 07/11/2005 10:00 .. GO Annotations Question - Jeff Shearstone 07/08/2005 03:57 .. unable to use Genelists - Benoit HENNUY 07/07/2005 23:25 .. genepix import - Sang-Ho 07/06/2005 09:12 .. RE: Genbank Number - Amy Lam 07/01/2005 14:21 .. RE: Genbank Number - Amy Lam 07/01/2005 08:41 .. class prediction error - nataly strunnikova 06/30/2005 13:55 .. Genbank Number - Ciprian Gheorghe 06/30/2005 10:33 .. RE: Data normalization from .CEL files - Supriya Menezes 06/30/2005 10:22 .. Gene Identifiers Worksheet Problems - Jeff Shearstone 06/29/2005 14:16 .. Data normalization from .CEL files - Guck Ooi 06/29/2005 09:59 .. RE: RMA normalized data in collation - Supriya Menezes 06/28/2005 12:17 .. RMA normalized data in collation - Richard Drake 06/28/2005 11:11 .. RE: Error on camparison - Supriya Menezes 06/28/2005 06:06 .. RE: Error on camparison - Ciprian Gheorghe 06/24/2005 11:23 .. RE: rotating MDS plot in powerpoint - Catherine Campbell 06/22/2005 16:20 .. RE: Data import Wizard not working - Michael Ngan 06/22/2005 13:36 .. Data import Wizard not working - Colin 06/20/2005 16:38 .. ClassPrediction Error - George Watts 06/20/2005 12:56 .. RE: can not normalize data - Supriya Menezes 06/20/2005 10:46 .. can not normalize data - Zhichang 06/17/2005 10:40 .. Cannot Load BRB Array tools - Nicole McNeil 06/16/2005 16:25 .. RE: Failure in loading the Data - Supriya Menezes 06/16/2005 13:58 .. RE: Failure in loading the Data - Jane 06/13/2005 17:43 .. Failure in loading the Data - Xiaozhong 06/13/2005 14:01 .. RE:"Select Gene Subset"-not working - Supriya Menezes 06/13/2005 11:29 .. "Select gene subset" not working - Benjamin Tang 06/10/2005 13:51 .. ClassPrediction Error - George Watts 06/08/2005 14:58 .. RE: Error on camparison - Supriya Menezes 06/08/2005 14:50 .. - zhichang 06/08/2005 14:17 .. Error on camparison - Zhichang 06/07/2005 13:42 .. ClassPrediction Error - George Watts 06/07/2005 10:20 .. RE: Loading Affymetrix .CEL files - Supriya Menezes 06/03/2005 23:55 .. Loading Affymetrix .CEL files - Guck Ooi 06/03/2005 16:25 .. ClassPrediction Error - George Watts 06/03/2005 10:45 .. ClassComparison Error - Joseph Brown 06/02/2005 17:37 .. ClassPrediction Error - George Watts 06/02/2005 01:24 .. RE: Fail to perform gene subet - yu-hsin 06/01/2005 14:33 .. v3.3.0-Beta_2 uploaded - Supriya Menezes 05/27/2005 14:46 .. RE: pathway comparison - Supriya Menezes 05/27/2005 14:36 .. RE: ArrayTool on Excel toolbar - Supriya Menezes 05/26/2005 22:26 .. pathway comparison - Hui-Ming 05/26/2005 11:37 .. ArrayTool on Excel toolbar - DL 05/26/2005 09:48 .. RE: Fail to perform gene subet - Supriya Menezes 05/25/2005 23:52 .. Fail to perform gene subet - yu-hsin 05/25/2005 11:34 .. RE: OLE action message - Alfredo Hidalgo 05/25/2005 05:44 .. Cut-Tree bug - Andrea 05/24/2005 15:15 .. RE: ontology structure download pro - John Meerman 05/23/2005 11:35 .. RE: class prediction->test set labels - Supriya Menezes 05/20/2005 18:55 .. class prediction->test set labels - Eric 05/19/2005 15:46 .. RE: Pairwise Correlation improvement - Ming-Chung Li 05/19/2005 12:49 .. Pairwise Correlation improvement - Paul Leo 05/17/2005 13:44 .. RE: BRB 3.2.3 - R 2.1.0 incompatibility - Supriya Menezes 05/17/2005 10:56 .. BRB 3.2.3 - R 2.1.0 incompatibility - Paolo Sonego 05/16/2005 14:44 .. Why OLD treeview - Paul Leo 05/13/2005 17:08 .. RE: Cut Tree ? not working - Supriya Menezes 05/13/2005 15:03 .. How to annotate a genelist - Paul Leo 05/12/2005 22:55 .. Cut Tree ? not working - Carleton Garrett 05/10/2005 11:06 .. RE: OLE action message - Supriya Menezes 05/08/2005 04:29 .. Class comparison & prediction - Prasad Phirke 05/06/2005 14:54 .. OLE action message - Alfredo Hidalgo 05/05/2005 15:20 .. RE: Fold difference in Scatterplot - Supriya Menezes 05/05/2005 14:57 .. RE: problems in v3.3.0beta - Supriya Menezes 05/05/2005 14:05 .. RE: Fold difference in Scatterplot - Sven Klaschik 05/05/2005 11:32 .. RE: Fold difference in Scatterplot - Supriya Menezes 05/05/2005 09:55 .. RE: Cluster - Sven Klaschik 05/04/2005 15:34 .. RE: Cluster - Paul Shrabstein 05/04/2005 13:50 .. Cluster - Sven Klaschik 05/04/2005 13:07 .. problems in v3.3.0beta - Gerdine Sanson 05/04/2005 11:10 .. Fold difference in Scatterplot - Sven Klaschik 05/03/2005 11:06 .. -RE to Xin Wang - Supriya Menezes 05/03/2005 10:58 .. RE: Error messages from 3.3.0_beta 1 - Supriya Menezes 05/03/2005 10:54 .. RE: Different chips - Supriya Menezes 05/02/2005 17:02 .. - Xin Wang 05/02/2005 11:56 .. Error messages from 3.3.0_beta 1 - Imbeaud Sandrine 04/30/2005 05:28 .. Different chips - DLam 04/28/2005 13:55 .. RE: GeneName Not displayed in Class Com - Supriya Menezes 04/28/2005 11:14 .. RE: gen subset filter - Supriya Menezes 04/27/2005 17:02 .. GeneName Not displayed in Class Com - Paul Leo 04/27/2005 15:25 .. gen subset filter - David 04/22/2005 14:44 .. RE: ontology structure download problem - Supriya Menezes 04/21/2005 18:59 .. ontology structure download problem - Jun Xu 04/08/2005 16:39 .. RE: ANOVE for mixed effects -- help - Paul Leo 04/08/2005 16:22 .. RE: ANOVE for mixed effects -- help - Ming-Chung 04/08/2005 16:03 .. ANOVE for mixed effects Vs -- help - Paul Leo 04/08/2005 15:54 .. RE: ANOVE for mixed effects -- help - Paul Leo 04/08/2005 15:53 .. ANOVE for mixed effects -- help - Paul Leo 04/07/2005 16:45 .. RE: WARNING: Distribution assumptions u - Supriya Menezes 04/06/2005 14:39 .. WARNING: Distribution assumptions u - Paul Leo 04/01/2005 10:59 .. RE: How to define technical replicates? - Supriya Menezes 04/01/2005 10:43 .. RE: Some data are filtered out - Supriya Menezes 03/31/2005 19:11 .. How to define technical replicates? - Jun Xu 03/31/2005 19:02 .. Some data are filtered out - Jun Xu 03/30/2005 09:56 .. RE: Aliase - Ming-Chung Li 03/30/2005 03:54 .. Aliase - David 03/15/2005 11:05 .. RE: technical ? on Clustering - Supriya Menezes 03/15/2005 11:01 .. RE: GO analysis using one class - Supriya Menezes 03/14/2005 12:26 .. technical ? on Clustering - Bill Dunty 03/09/2005 16:47 .. GO analysis using one class - Paul Cantalupo 03/09/2005 16:14 .. RE: results are opposite to expected ! - Supriya Menezes 03/09/2005 16:03 .. RE: ftp problem - Supriya Menezes 03/09/2005 13:26 .. results are opposite to expected ! - Sergio 03/08/2005 19:14 .. ftp problem - Klara Osapay 03/08/2005 11:02 .. RE: version 3.2.3 installation bug? - Amy Lam 03/08/2005 10:49 .. version 3.2.3 installation bug? - Sophie Nadaud 03/07/2005 10:47 .. error 55 - ana 03/07/2005 09:28 .. RE: Normalize arrays to each other - Supriya Menezes 03/07/2005 09:26 .. RE: Post Hoc analysis - Supriya Menezes 03/04/2005 17:14 .. 3.2.3 uploaded - Amy Lam 03/04/2005 13:51 .. Post Hoc analysis - Paul Cantalupo 03/04/2005 13:25 .. Normalize arrays to each other - Paul Cantalupo 03/04/2005 12:44 .. 3.2.3 installation problem fixed - Paul Shrabstein 03/04/2005 09:32 .. RE: Problem with SAM, NEED HELP! - Supriya Menezes 03/04/2005 09:24 .. How to install BRB 3_2_3 - Gerdine Sanson 03/04/2005 08:23 .. BRB array tools update pb - Laurence Monnet 03/04/2005 06:41 .. Problem with SAM, NEED HELP! - Michael Bakerman 03/03/2005 21:52 .. RE: BRB Array Tools Install - Jesse Myers 03/03/2005 13:27 .. BRB Array Tools Install - Damon Hand 03/03/2005 02:42 .. RE: GO analysis - David 03/02/2005 10:51 .. Plugin download - Sven Klaschik 03/02/2005 10:48 .. Genelist comparison - Sven Klaschik 03/01/2005 18:02 .. RE: Adding 1 replicate alters SAM-help - Richard Simon 03/01/2005 17:22 .. RE: GO analysis - Richard Simon 03/01/2005 17:08 .. RE: system requirement for large data - Richard Simon 03/01/2005 11:41 .. RE: system requirement for large data - Supriya Menezes 02/26/2005 14:37 .. system requirement for large data - Soon Paik 02/25/2005 06:14 .. GO analysis - david 02/24/2005 15:21 .. RE: Adding 1 replicate alters SAM-help - 02/24/2005 15:02 .. RE: Adding 1 replicate alters SAM-help - Supriya Menezes 02/24/2005 11:10 .. RE: Adding 1 replicate alters SAM-help - Bill Dunty 02/22/2005 15:21 .. RE: $#@%!--Problem Collating - 02/22/2005 11:23 .. RE: randomize multivariate test - Supriya Menezes 02/22/2005 10:09 .. RE: Adding 1 replicate alters SAM-help - Ming-Chung Li 02/18/2005 16:32 .. RE: randomize multivariate test - Trisha 02/18/2005 11:34 .. Adding 1 replicate alters SAM-help - Bill Dunty 02/17/2005 14:10 .. RE: error randomize multivariate test - Supriya Menezes 02/17/2005 09:23 .. error randomize multivariate test - Trisha 02/02/2005 14:33 .. RE: ANOVA halts (R-com problem?) - Supriya Menezes 01/31/2005 13:05 .. ANOVA halts (R-com problem?) - Sergio 01/26/2005 13:09 .. RE: conflict with PAM - Supriya Menezes 01/26/2005 10:10 .. conflict with PAM - Annalisa Astolfi 01/24/2005 14:30 .. RE: KS in Gene Ontology Comparison - Amy Lam 01/24/2005 13:31 .. RE: Problem with TreeView - Amy Lam 01/24/2005 13:27 .. RE: Paired vs Unpaired Class Comparison - Amy Lam 01/24/2005 05:46 .. Problem with TreeView - Tim Willinger 01/21/2005 04:01 .. KS in Gene Ontology Comparison - Massimiliano Gentile 01/20/2005 15:44 .. RE: error in intersect genelists - Supriya Menezes 01/20/2005 13:24 .. error in intersect genelists - gerdine sanson 01/19/2005 14:32 .. Paired vs Unpaired Class Comparison - Lana Schaffer 01/18/2005 14:11 .. $#@%!--Problem Collating - Jeff Mans 01/17/2005 14:07 .. RE: Errir upon starting Excel - Supriya Menezes 01/17/2005 06:51 .. Errir upon starting Excel - Massimiliano Gentile 01/14/2005 09:31 .. RE: Best version of R to use? - Supriya Menezes 01/13/2005 22:52 .. Best version of R to use? - Ryan van Laar 01/13/2005 20:51 .. experimental descriptors - Han WN 01/12/2005 21:24 .. calss comparision - Su qin 01/12/2005 16:24 .. Class comparison - Junfeng Wang 01/11/2005 10:47 .. RE: Analysis of stanford array - Supriya Menezes 01/07/2005 17:16 .. Analysis of stanford array - J Pannu 01/03/2005 18:15 .. Run error'9':subscript out of range - su qin 01/03/2005 17:01 .. Run-time error'9': - Su Qin 12/30/2004 13:31 .. Bugs fixed in v3.2.2 - Amy Lam 12/28/2004 16:11 .. RE: GOanalysis - Supriya Menezes 12/28/2004 15:14 .. GOanalysis - Avadhut Joshi 12/23/2004 13:19 .. RE: instal on EXCEL97-> error compilat - Amy Lam 12/23/2004 13:15 .. instal on EXCEL97-> error compilat - greg 12/21/2004 15:27 .. RE: add arrays - Supriya Menezes 12/21/2004 09:09 .. add arrays - Forest 12/20/2004 16:07 .. RE: STATISTICS - Amy Lam 12/20/2004 15:34 .. class comp. between red/grn channel - Michael Hanson 12/16/2004 16:08 .. STATISTICS - rich 12/15/2004 19:04 .. v3.2.1 released - Amy Lam 12/14/2004 16:19 .. RE: Missing Value Imputation - Supriya Menezes 12/14/2004 15:48 .. RE: Plotting Lowess Line - Supriya Menezes 12/13/2004 15:03 .. Missing Value Imputation - Sarah 12/13/2004 08:59 .. Plotting Lowess Line - Ganesh Shankar 12/10/2004 12:38 .. RE: Can't execute SAM - Supriya Menezes 12/10/2004 12:16 .. RE: SAM and class comparison - Rich Simon 12/10/2004 11:59 .. RE: Problem mixed effects Annova - Supriya Menezes 12/10/2004 11:27 .. To JP - regarding Collation - Supriya Menezes. 12/10/2004 10:57 .. RE: SAM and class comparison - Supriya Menezes 12/09/2004 17:52 .. Can't execute SAM - Jaspreet Pannu 12/09/2004 16:12 .. Problem mixed effects Annova - Feng 12/09/2004 11:31 .. - JP 12/06/2004 16:10 .. - Ming-Chung Li 12/06/2004 15:10 .. RE: Uninstall - Paul Shrabstein 12/04/2004 20:24 .. - Feng 12/04/2004 15:48 .. Uninstall - Sailaja Peddada 12/04/2004 12:07 .. SAM and class comparison - Lenaic Paon 12/03/2004 16:33 .. RE: Can't download Ontology Structu - Filemon Tan 12/02/2004 16:42 .. RE: openoffice - Amy Lam 12/02/2004 16:24 .. RE: GO stats - Amy Lam 12/02/2004 16:20 .. RE: Can't download Ontology Structu - Amy Lam 12/02/2004 11:32 .. Can't download Ontology Structure - Paul Cantalupo 12/02/2004 10:36 .. ClassComparison GOanalysis - Paul Cantalupo 12/02/2004 02:16 .. openoffice - Annalisa Astolfi 11/24/2004 14:11 .. GO stats - Trisha 11/23/2004 11:05 .. RE: Plugin of ANOVA - Amy Lam 11/23/2004 11:04 .. RE: sample size - Amy Lam 11/22/2004 11:12 .. sample size - Jorge Torres-Munoz Ph.D. 11/19/2004 19:32 .. Plugin of ANOVA - Yu 11/19/2004 10:03 .. RE: Automation error message - 11/18/2004 16:22 .. RE: clustering analysis - Amy Lam 11/18/2004 12:44 .. clustering analysis - xiang yin 11/17/2004 16:18 .. RE: Automation error message - Amy Lam 11/17/2004 12:09 .. Automation error message - Joyce 11/16/2004 10:50 .. R 2.0 with arraytools - Christopher Coldren 11/15/2004 17:06 .. RE: RMA in version 3.2 - Amy Lam 11/15/2004 16:46 .. RMA in version 3.2 - Adam O'Connor 11/15/2004 12:03 .. RE: CEL file importing errors - Amy Lam 11/15/2004 11:24 .. CEL imporing error - soon paik 11/14/2004 18:25 .. CEL file importing errors - Soonmyung Paik 11/11/2004 18:03 .. RE: Error: R Server not running alr - Amy Lam 11/11/2004 17:00 .. RE: array CGH - Amy Lam 11/11/2004 10:51 .. Error: R Server not running already - Michael Tseng 11/11/2004 08:37 .. array CGH - Carl Bruder 11/10/2004 15:39 .. RE: about clustering - Amy Lam 11/06/2004 10:43 .. RE: about clustering - memphis 11/05/2004 14:32 .. RE: about clustering - Amy Lam 11/05/2004 04:24 .. about clustering - memphis 11/02/2004 18:09 .. RE: T-test OR F-test - Amy Lam 11/01/2004 13:27 .. T-test OR F-test - Hao Liu 10/29/2004 18:10 .. missing value issue - Amy Lam 10/28/2004 19:05 .. RE: Problem with installation--(D)C - Amy Lam 10/28/2004 18:59 .. problem uninstalling and annotating - Amy Lam 10/26/2004 21:28 .. - Jerry Xu 10/26/2004 16:09 .. Problem with installation--(D)Com - Trisha 10/25/2004 12:37 .. unable to annotate - Edmund Chang 10/25/2004 11:53 .. problem uninstalling - Edmund Chang 10/22/2004 10:27 .. v3.2 - Beta7 has been uploaded - Amy Lam 10/20/2004 19:40 .. RE: Office 2003 or OpenOffice ready - Amy Lam 10/20/2004 19:37 .. RE: missing value issue - Amy Lam 10/20/2004 19:11 .. RE: Automation Error - Amy Lam 10/19/2004 13:51 .. Office 2003 or OpenOffice ready? - Michael Tseng 10/15/2004 23:55 .. bug in beta 7 - Hao Liu 10/15/2004 23:33 .. fatal error in backend - Hao Liu 10/14/2004 09:25 .. missing value issue - Xu Jerry 10/11/2004 20:57 .. RE: Automation Error - Michael Tseng 10/08/2004 14:37 .. RE: installer crashes - Jeff Day 10/07/2004 17:34 .. RE: MS Vis Basic error - Amy Lam 10/07/2004 17:28 .. Clarify: MS Vis Basic error - beau 10/07/2004 17:26 .. RE: filter and subset - Amy Lam 10/07/2004 16:47 .. MS Vis Basic error - beau 10/07/2004 16:15 .. filter and subset - Edmund Chang 10/06/2004 18:38 .. Class comparison/prediction errors - Amy Lam 10/06/2004 18:32 .. RE: clustering error - Amy Lam 10/06/2004 18:29 .. RE: basic question - Amy Lam 10/06/2004 18:16 .. RE: MDS question - Amy Lam 10/06/2004 18:05 .. RE: Gene Ontology Analysis - Amy Lam 10/06/2004 17:50 .. RE: error message:MDS - Amy Lam 10/06/2004 17:46 .. RE: Lowess normalization - Amy Lam 10/06/2004 17:41 .. RE: Clustering problem - Amy Lam 10/04/2004 13:47 .. clustering error - Haiyan Yang 09/28/2004 19:47 .. basic question - nita 09/28/2004 17:34 .. class comparison error - mdg 09/28/2004 15:14 .. MDS question - Paul Cantalupo 09/28/2004 15:10 .. Gene Ontology Analysis - Paul Cantalupo 09/27/2004 14:22 .. 3.2Beta6 error in ClassComparison - Christopher Coldren 09/24/2004 18:43 .. RE: Targetted arrays - Amy Lam 09/24/2004 18:33 .. RE: Three problems - Amy Lam 09/22/2004 21:41 .. error message:MDS - J Seo 09/17/2004 08:39 .. Lowess normalization - Paul Cantalupo 09/17/2004 01:24 .. Clustering problem - Jin W Kim 09/16/2004 09:55 .. Targetted arrays - Kieran Meade 09/14/2004 18:27 .. publishing quality dendrogram - sb 09/13/2004 11:10 .. Three problems - laurex 09/09/2004 21:39 .. v3.2 - Beta6 has been uploaded - Amy Lam 09/07/2004 19:09 .. RE: Error with Cluster Listing - Amy Lam 09/06/2004 22:56 .. Error with Cluster Listing - Andy 08/24/2004 16:10 .. RE: Random variance model - Rich Simon 08/20/2004 11:54 .. Random variance model - KMeade 08/16/2004 11:52 .. RE: Unable to load CEL files - Ola Nilsson 08/16/2004 09:55 .. Unable to load CEL files - Mohammed Junaid 08/13/2004 13:20 .. Same problem as Haiyan Yang - Ola Nilsson 08/09/2004 13:53 .. Can not input .CEL files - Haiyan Yang 08/06/2004 17:20 .. RE: reverse experiments - Amy Lam 08/06/2004 17:15 .. RE: startup errors - Amy Lam 08/06/2004 17:13 .. RE: macroarray data - Amy Lam 08/06/2004 17:11 .. RE: Printing Multidimensional PLots - Amy Lam 08/06/2004 17:09 .. RE: need a help - Amy Lam 08/06/2004 15:15 .. reverse experiments - Gerdine Sanson 08/06/2004 00:28 .. SKim - SKim 08/05/2004 14:12 .. Affy Annotation and others help - Leo Gao 08/05/2004 07:40 .. startup errors - Geoff Patton 08/05/2004 07:24 .. macroarray data - C. Schulze Gronover 08/04/2004 19:59 .. Printing Multidimensional PLots - Nishant 08/04/2004 01:07 .. need a help - Soomi Kim 08/03/2004 16:21 .. Quantitative trait Analysis - Gian Carlo Antonini C, MD 08/03/2004 13:51 .. RE: Correlations in Cluster analysis - Amy Lam 08/02/2004 17:23 .. Correlations in Cluster analysis - Chan 08/02/2004 09:02 .. RE: Can't import CEL files - Amy Lam 07/29/2004 17:10 .. Can't import CEL files - Dongyao Ni 07/29/2004 09:37 .. installer crashes - Amy Lam 07/28/2004 16:22 .. - Catherine 07/27/2004 19:47 .. RE: Run-time error '55' File already op - Amy Lam 07/27/2004 19:41 .. RE: CGAP lists - Amy Lam 07/27/2004 19:34 .. RE: Affymetrix Annotations Ifo - Amy Lam 07/26/2004 20:19 .. Run-time error '55' File already op - Ryan 07/25/2004 13:50 .. CGAP lists - Edmund Chang 07/20/2004 05:45 .. sum error doing 2000 permutations - Viktoria Bogner 07/09/2004 14:42 .. Affymetrix Annotations Ifo - Gian Carlo 07/07/2004 18:53 .. RE: Normalisation problem - Amy Lam 07/07/2004 18:49 .. RE: Class Comparison Problems - Amy Lam 07/07/2004 18:43 .. RE: JAVA runtime environment - Amy Lam 07/07/2004 00:45 .. Normalisation problem - Ryan van Laar 07/02/2004 15:40 .. Class Comparison Problems - mylesm 06/29/2004 15:55 .. JAVA runtime environment - Irene Helenowski 06/23/2004 13:22 .. RE: importing lists? - Amy Lam 06/23/2004 13:14 .. RE: R version 1.9.0 not available - Amy Lam 06/23/2004 10:36 .. R version 1.9.0 not available - Xin Wang 06/22/2004 23:54 .. importing lists? - Edmund Chang 06/22/2004 11:32 .. v3.2 Beta_5 uploaded - Amy Lam 06/18/2004 17:23 .. RE: Office 2003 - Amy Lam 06/18/2004 17:21 .. RE: arraytools won't initiate - Amy Lam 06/18/2004 17:15 .. RE: Refreshing R Session - Amy Lam 06/18/2004 07:04 .. Office 2003 - Kieran Meade 06/16/2004 13:19 .. the version I used is the latest - hao 06/16/2004 13:18 .. arraytools won't initiate - hao 06/16/2004 10:11 .. Refreshing R Session - Toni Whsitler 06/15/2004 04:34 .. run-time error '1004' - Dietmar Pfeifer 06/11/2004 14:58 .. Run-time error '62' - Sat 06/10/2004 12:05 .. class comparison error - Jason Rock 06/07/2004 15:15 .. v3.2 Beta_4 has been uploaded - Amy Lam 06/07/2004 14:23 .. RE: Current version SAM problems - Amy Lam 06/05/2004 14:57 .. RE: unable to annotate expression d - Edmund Chang 06/05/2004 00:59 .. unable to annotate expression data - Edmund Chang 06/03/2004 23:49 .. Sam issues - partly resolved - Ryan van Laar 06/03/2004 22:03 .. Current version SAM problems - Ryan van Laar 06/03/2004 16:18 .. Excel 2003 Compatibility - James Balow, Jr. 06/03/2004 10:19 .. RE: Normalization of one array - Amy Lam 06/03/2004 10:19 .. RE: RMA normalization vs Control - Amy Lam 05/31/2004 19:41 .. Normalization of one array - Tere 05/25/2004 19:13 .. RMA normalization vs Control - Gian Carlo Antonini C. 05/21/2004 19:13 .. RE: import logged data - Amy Lam 05/19/2004 18:36 .. RE: class comparison with RVM - Amy Lam 05/19/2004 11:19 .. class comparison with RVM - Amy 05/19/2004 10:41 .. import logged data - Hao 05/18/2004 13:52 .. RE: problem with MultiD scaling - Amy Lam 05/17/2004 15:53 .. problem with MultiD scaling - Nick Holtan 05/12/2004 16:34 .. another bug - kent Hunter 05/06/2004 09:17 .. RE: Reproducibility measure - Roel Verhaak 05/06/2004 09:09 .. Reproducibility measure - Roel Verhaak 05/04/2004 13:28 .. ANOVA problem - Narendra Kaushik 05/04/2004 13:21 .. RE: Problem with Data Import - Sat 05/04/2004 13:06 .. Problem with Data Import - Sat 05/03/2004 21:08 .. Class comparison problem - Geraldine Rogers 05/03/2004 20:32 .. Version 3.2 BETA uploaded - Amy Lam 04/26/2004 17:24 .. RE: I have the same prolblem with David - Amy Lam 04/23/2004 23:17 .. I have the same prolblem with David - TH Kim 04/23/2004 16:35 .. RE: Error during installation - Amy Lam 04/22/2004 16:18 .. The other computer - David L Beck 04/22/2004 16:08 .. Error during installation - David L. Beck 04/20/2004 11:41 .. RE: Run time error 91 - Narendra Kaushik 04/19/2004 20:36 .. RE: M vs A plot - Amy Lam 04/19/2004 20:34 .. RE: Problems with the decimal separator - Amy Lam 04/19/2004 16:11 .. M vs A plot - Peter 04/19/2004 11:54 .. Problems with the decimal separator - Tere 04/19/2004 10:06 .. RE: Run time error 91 - Amy Lam 04/16/2004 19:04 .. Run time error 91 - Narendra Kaushik 04/16/2004 18:14 .. RE: Can't cluster with euclidean metric - Amy Lam 04/16/2004 01:10 .. Can't cluster with euclidean metric - Rodrigo A Panepucci 04/06/2004 13:44 .. RE: version difference - Amy Lam 04/06/2004 13:40 .. RE: Problems with multiple accounts - Amy Lam 04/06/2004 13:31 .. RE: Problem annotating with genelis - Amy Lam 04/05/2004 21:23 .. verstion difference - youngju 04/05/2004 09:12 .. Problems with multiple accounts - Marco Severgnini 04/01/2004 19:54 .. RE: Problem annotating with genelis - Rosemary Heathcott 03/31/2004 19:42 .. RE: DendrogramGenes.jpg size - Amy Lam 03/31/2004 19:39 .. RE: Problem annotating with genelists - Amy Lam 03/31/2004 18:35 .. DendrogramGenes.jpg size - Seby Edassery 03/28/2004 22:25 .. Problem annotating with genelists - Rosemary Heathcott 03/23/2004 17:29 .. RE: problem with class comparison - Amy Lam 03/18/2004 13:23 .. problem with class comparison - hao 03/11/2004 12:45 .. download ArrayTool - Hua Su 03/11/2004 05:31 .. RE: results in textfile - Jane Nerz 03/10/2004 18:10 .. Using R scripts in BRB-ArrayTools - Amy Lam 03/10/2004 18:06 .. RE: results in textfile - Amy Lam 03/09/2004 12:13 .. - Narendra Kaushik 03/08/2004 14:23 .. Re: Text file import - Richard Williams 03/08/2004 06:01 .. results in textfile - Jane Nerz 03/04/2004 22:22 .. RE: More on text file import problem - Amy Lam 03/04/2004 20:48 .. RE: R-(D)COM 1.2 does not install - Amy Lam 03/02/2004 09:31 .. More on text file import problem - Richard Williams 03/01/2004 21:06 .. RE: MDS,R(D)COM,& txtfile import probs - Sebastian Hau 03/01/2004 15:19 .. MDS,R(D)COM,& txtfile import probs - Richard Williams 02/28/2004 12:37 .. R-(D)COM 1.2 does not install - Chris Aston 02/28/2004 08:07 .. error encoutered in multi-dimension - Sebastian Hau 02/27/2004 17:34 .. RE: installation - Amy Lam 02/27/2004 16:13 .. RE: Normalization Housekeeping genes - Amy Lam 02/27/2004 15:35 .. RE: computer performance tips? - Amy Lam 02/27/2004 11:58 .. installation - Lewis Bowman 02/26/2004 10:50 .. Normalization Housekeeping genes - manuelf 02/25/2004 05:44 .. affy annotation - James F. Reid 02/19/2004 12:22 .. Error 1004 + administrator session - Sophie Nadaud 02/18/2004 16:13 .. computer performance tips? - Chris Coldren 02/17/2004 16:20 .. RE: TreeView does not start - Amy Lam 02/17/2004 16:03 .. RE: Runtime error 13 - Amy Lam 02/17/2004 15:59 .. RE: New collating - no run time error - Amy Lam 02/16/2004 10:10 .. TreeView does not start - Natalia Shulzhenko 02/13/2004 12:35 .. New collating - no run time error - Sophie Nadaud 02/13/2004 11:59 .. Runtime error 13 - Sophie Nadaud 02/09/2004 10:35 .. Automation error in collation - Amy Lam 02/08/2004 21:56 .. - Leigh Ellmers 02/04/2004 16:19 .. RE: VBScript update - Amy Lam 02/04/2004 16:16 .. RE: installation on WinXP professional - Amy Lam 02/04/2004 16:08 .. RE: installation problem - Amy Lam 02/04/2004 16:05 .. RE: how do I get affymetrix annotation - Amy Lam 02/04/2004 16:01 .. RE: how do I get SOURCE annotation - Amy Lam 02/04/2004 15:19 .. RE: compile error - Amy Lam 02/03/2004 14:44 .. VBScript update - Jo Hardin 02/03/2004 12:39 .. RE: installation on WinXP professional - Hao 02/02/2004 13:56 .. installation on WinXP professional - Catherine 02/02/2004 06:54 .. installation problem - Christiane Nerz 01/30/2004 16:41 .. how do I get affymetrix annotation - Hao Liu 01/30/2004 16:24 .. how do I get SOURCE annotation - Hao 01/30/2004 12:47 .. compile error - Terry 01/29/2004 17:29 .. RE: normalization - Amy Lam 01/29/2004 16:24 .. normalization - Ana Robles 01/13/2004 18:49 .. RE: Clustering with Subset of Genes - Amy Lam 01/13/2004 18:42 .. RE: (D) COM Server Error - Amy Lam 01/13/2004 09:15 .. Clustering with Subset of Genes - Frans Gerbens 01/12/2004 17:10 .. (D) COM Server Error - Thomas Whisenant 01/12/2004 12:54 .. RE: Run Time error 1004 - Marc Salit 01/12/2004 11:55 .. RE: Collating unlooged data - Amy Lam 01/08/2004 13:08 .. Collating unlooged data - Steve Head 01/05/2004 20:05 .. RE: Run Time error 1004 - Amy Lam 01/05/2004 18:31 .. RE: Analysis internal inconsistency? - Amy Lam 01/05/2004 18:23 .. Run Time error 1004 - seby edassery 01/05/2004 17:49 .. Run-time Error "1004" - Amy Wang 01/05/2004 14:25 .. RE: Run time error in Affy collation - Amy Lam 01/05/2004 13:16 .. Analysis internal inconsistency? - Swarajit Biswas 01/05/2004 12:14 .. RE: Class Comparison Error - Amy Lam 01/05/2004 12:11 .. RE: scatter plot in version 3.1 - Amy Lam 12/29/2003 12:45 .. Run time error in Affy collation - Dave Jackson 12/29/2003 12:44 .. Run time error in Affy collation - Dave 12/29/2003 10:02 .. Class Comparison Error - Cathy 12/26/2003 17:57 .. scatter plot in version 3.1 - Sergio 12/24/2003 16:46 .. RE: statistical difference - Amy Lam 12/23/2003 11:55 .. statistical difference - Weihan Wang 12/19/2003 18:07 .. RE: Run Error 13 - Amy Lam 12/19/2003 18:00 .. Run Error 13 - Dan Zhou 12/19/2003 14:32 .. RE: publication - Amy Lam 12/15/2003 12:19 .. publication - weihan wang 12/10/2003 17:23 .. RE: error msg in beta version - Amy Lam 12/09/2003 11:53 .. RE: error msg in beta version - James Yu 12/04/2003 13:38 .. Class comparison problem - Zongyi Hu 12/03/2003 17:57 .. RE: error msg in beta version - Amy Lam 12/03/2003 16:03 .. RE: collating problem - yunling Xu 12/02/2003 13:58 .. collating problem - Yunling Xu 12/01/2003 15:51 .. error msg in beta version - Vaiju Krishnan 11/25/2003 16:11 .. v3.1 BETA now available - Amy Lam 11/20/2003 20:04 .. problem in survival anlaysis - Zhangsheng Yu 11/20/2003 03:13 .. Runtime error in multiple chip sets - K.Prashanthi 11/19/2003 21:16 .. MDS - Zongyou Guo 11/19/2003 17:38 .. mismatch error in hierarch cluster - Dave Jackson 11/19/2003 16:48 .. RE: SOURCE annotation - Amy Lam 11/19/2003 16:35 .. RE: Survival analysis - Amy Lam 11/18/2003 23:22 .. RE: SOURCE annotation - HL 11/18/2003 22:44 .. runtime error at end of collation - Chung-Hae 11/18/2003 03:18 .. Survival analysis - Seny 11/14/2003 17:06 .. RE: Run-Time Error - Amy Lam 11/14/2003 17:05 .. RE: SOURCE annotation - Amy Lam 11/13/2003 11:16 .. Run-Time Error - Kent Hunter 11/12/2003 10:53 .. SOURCE annotation - HL 11/10/2003 15:18 .. RE: rotating MDS plot in powerpoint - Amy Lam 11/10/2003 15:17 .. RE: New version release? - Amy Lam 11/10/2003 15:14 .. RE: Max number of columns=? - Amy Lam 11/10/2003 15:10 .. RE: Yeast gene annotation - Amy Lam 11/07/2003 21:30 .. RE: How to deal with dye swapping - sohail 11/06/2003 20:53 .. A possible bug in collating bug - wei 11/06/2003 20:21 .. Max number of columns=? - wei 11/06/2003 15:09 .. New version release? - vyjoo krishnan 11/06/2003 10:44 .. rotating MDS plot in powerpoint - Iris van Staveren 11/04/2003 04:50 .. Yeast gene annotation - Gustav Styger 11/03/2003 12:05 .. RE: Re-filtering data - Amy Lam 10/30/2003 11:53 .. How to deal with dye swapping - Sergio 10/29/2003 13:50 .. Re-filtering data - Hao 10/24/2003 12:39 .. RE: Permutations for paired comparisons - Rich Simon 10/23/2003 11:07 .. RE: Permutations for paired comparisons - Kellie Archer 10/22/2003 15:28 .. RE: technical replicates - Amy Lam 10/22/2003 15:21 .. RE: Permutations for paired comparisons - Amy Lam 10/21/2003 19:35 .. technical replicates - Tony Lin 10/20/2003 12:31 .. Permutations for paired comparisons - Kellie Archer 10/14/2003 18:18 .. RE: Dcom - Amy Lam 10/13/2003 07:48 .. Dcom - Iris van Staveren 10/09/2003 19:01 .. Run Time Error - Amy Lam 10/09/2003 18:48 .. RE: scatter plot problems - Amy Lam 10/09/2003 11:11 .. - Narendra Kaushik 10/07/2003 15:16 .. RE: Outlier line in scatter plot missin - Catherine Dumur 10/07/2003 15:05 .. scatter plot problems - Catherine Dumur 10/07/2003 13:17 .. RE: how does class averaging work? - Michael D. George 10/07/2003 11:18 .. RE: class prediction using all genes - Amy Lam 10/07/2003 11:16 .. RE: Outlier line in scatter plot missin - Amy Lam 10/07/2003 10:44 .. RE: how does class averaging work? - Richard Simon 10/01/2003 12:05 .. Outlier line in scatter plot missin - Sergio 10/01/2003 12:03 .. Collating problem found! - Sergio Baranzini 10/01/2003 10:55 .. Collatin problem - Sergio 09/30/2003 22:11 .. Collatin problem - Sergio 09/28/2003 18:08 .. RE: class prediction using all genes - Jianjun 09/26/2003 18:22 .. RE: Outputing Cluster Corellation Value - Amy Lam 09/26/2003 17:51 .. how does class averaging work? - Michael D. George 09/26/2003 15:20 .. RE: Help with Run-time error - Amy Lam 09/25/2003 17:31 .. - Sohail Ahmed 09/25/2003 13:36 .. Outputing Cluster Corellation Value - Bob Stearman 09/24/2003 15:28 .. Help with Run-time error - Julian Desmond 09/23/2003 17:59 .. Patch"E" for v3.0.2 uploaded - Amy Lam 09/23/2003 17:47 .. RE: scatter plot compile errors - Amy Lam 09/23/2003 17:45 .. RE: sample average - Amy Lam 09/23/2003 17:40 .. RE: collate data from separate file - Amy Lam 09/23/2003 17:26 .. RE: class prediction using all genes - Amy Lam 09/23/2003 03:04 .. sample average - Chris Jones 09/22/2003 14:35 .. collate data from separate file - Jianjun Yu 09/19/2003 16:20 .. scatter plot compile errors - Susan Miller 09/16/2003 23:39 .. class prediction using all genes - Jianjun Yu 09/16/2003 16:38 .. RE: Pairwise and Simultaneous ClassComp - Amy Lam 09/16/2003 13:08 .. RE: Citing BRB ArrayTools - Amy Lam 09/16/2003 13:04 .. Patch "D" for v3.0.2 uploaded - Amy Lam 09/14/2003 14:41 .. Pairwise and Simultaneous ClassComp - Xiaobo Lin 09/11/2003 18:34 .. Citing BRB ArrayTools - J Huff 09/11/2003 18:13 .. RE: Another scatterplot problem - Amy Lam 09/11/2003 12:53 .. Another scatterplot problem - Kim 09/10/2003 13:01 .. RE: Trouble with MDS after v3.0.2c - Amy Lam 09/10/2003 12:57 .. RE: Analysis problem - Amy Lam 09/08/2003 11:10 .. RE: Trouble with MDS after v3.0.2c - Zongyou Guo 09/07/2003 19:13 .. Analysis problem - Leigh Ellmers 08/28/2003 19:45 .. RE: scatterplot truncation - Amy Lam 08/28/2003 19:43 .. RE: R1.6.1 and R1.7 - Amy Lam 08/28/2003 12:54 .. scatterplot truncation - Kim 08/27/2003 19:17 .. R1.6.1 and R1.7 - Silvia E Crusco 08/27/2003 13:12 .. RE: Metrics used in the kNN of BRB? - Amy Lam 08/26/2003 08:05 .. Metrics used in the kNN of BRB? - Poussin 08/25/2003 15:38 .. RE: Trouble with MDS after v3.0.2c - Amy Lam 08/24/2003 12:46 .. Trouble with MDS after v3.0.2c - Helen Hu 08/22/2003 14:45 .. Patch for v3.0.2 has been uploaded - Amy Lam 08/21/2003 17:18 .. RE: R server; & collate Affy data - Amy Lam 08/21/2003 11:15 .. collate Affy data - Bin Ye 08/20/2003 16:13 .. Still trouble with R Server - Bob Stearman 08/20/2003 10:22 .. Version 3.02 has been re-uploaded - Amy Lam 08/19/2003 19:25 .. Compile error - Yi Wen 08/19/2003 18:20 .. RE: Compiler error - Jeff Sun 08/19/2003 17:48 .. Compiler error - Bamidele Tayo 08/12/2003 18:14 .. RE: Collating data to start analysis - Amy Lam 08/12/2003 10:54 .. Collating data to start analysis - M. Albert 08/06/2003 16:11 .. RE: Not log transformation again - Amy Lam 08/06/2003 16:08 .. RE: Error in ClassComparison - Amy Lam 08/05/2003 18:46 .. Not log transformation again - Zhifu Sun 08/05/2003 06:07 .. Error in ClassComparison - JF Laes (Bordet Inst) 08/04/2003 12:43 .. RE: Paired t-test formula - Rich Simon 08/01/2003 14:23 .. RE: reducing gene set - Amy Lam 08/01/2003 12:46 .. Paired t-test formula - Cameron McMunn 07/30/2003 16:05 .. reducing gene set - IL 07/23/2003 15:16 .. RE: survival analysis - Amy Lam 07/16/2003 19:20 .. survival analysis - Xiao-Jun Ma 07/11/2003 19:06 .. RE: using dchip expression values - 07/11/2003 18:18 .. RE: using dchip expression values - Amy Lam 07/10/2003 17:01 .. using dchip expression values - kathe bjork 07/10/2003 12:32 .. about Norm again - Jin Song 07/10/2003 11:56 .. About Norm - JS 07/09/2003 19:27 .. RE: Multidimensional scaling - Amy Lam 07/09/2003 19:26 .. - Amy Lam 07/03/2003 12:23 .. Multidimensional scaling - Jeff Lightfoot 06/30/2003 13:37 .. - amy cao 06/27/2003 14:26 .. RE: Image plot in two colors? - Amy Lam 06/27/2003 14:23 .. RE: Masked Affy Probesets - Amy Lam 06/27/2003 14:14 .. RE: Affy Gene Description Problem - Amy Lam 06/26/2003 16:42 .. class comparison - Qingqing Gong 06/26/2003 16:25 .. Image plot in two colors? - Jin Song 06/12/2003 17:15 .. Masked Affy Probesets - Chris Coldren 06/11/2003 17:42 .. Affy Gene Description Problem - Jeff Struewing 06/09/2003 21:52 .. Version 3.0.1 now available - Amy Lam 06/09/2003 21:51 .. RE: Automation Error - Amy Lam 06/04/2003 16:00 .. RE: Automation Error - Seth Tomblyn 06/03/2003 19:32 .. RE: error HKgene normalization - Amy Lam 06/03/2003 19:31 .. RE: fold change values? - Amy Lam 05/26/2003 09:56 .. error HKgene normalization - H.Katerberg 05/20/2003 17:01 .. fold change values? - mdg 05/06/2003 19:42 .. Bioinformatician - Magnus 05/01/2003 10:45 .. RE: Pearson Coefficient - Amy Lam 05/01/2003 10:43 .. RE: More Class Comparison problems - Amy Lam 04/30/2003 13:11 .. Pearson Coefficient - Ka Yin Kwong 04/29/2003 15:37 .. More Class Comparison problems - Chris Coldren 04/29/2003 14:50 .. Class Comparison fails w/ SOURCE - Chris Coldren 04/24/2003 17:23 .. RE: Visual Basic Run-time Error '91' - Amy Lam 04/24/2003 15:12 .. RE: prediction for more than 2 classes - Amy Lam 04/23/2003 03:33 .. Visual Basic Run-time Error '91' - James Wettenhall 04/22/2003 16:37 .. prediction for more than 2 classes - Natalia Shulzhenko 04/16/2003 17:33 .. RE: Automation Error - Amy Lam 04/16/2003 17:28 .. RE: Lowess smooth parameter - Amy Lam 04/16/2003 17:20 .. RE: compound covariate predictor - Amy Lam 04/16/2003 16:48 .. RE: Comparing arrays - Amy Lam 04/15/2003 12:53 .. Automation Error - Eric Troop 04/15/2003 11:35 .. Lowess smooth parameter - Ka Yin Kwong (Simon) 04/10/2003 05:20 .. compound covariate predictor - Iris van Staveren 04/09/2003 06:05 .. Comparing arrays - Charley de Bock 04/08/2003 16:12 .. RE: no outlier lines - Amy Lam 04/07/2003 02:54 .. no outlier lines - Charley de Bock 04/01/2003 11:05 .. RE: Loading Add-Ins Into Excel - Amy Lam 03/31/2003 15:07 .. Loading Add-Ins Into Excel - Katrina 03/28/2003 19:09 .. RE: New Version - Zongyou Guo 03/28/2003 17:53 .. RE: New Version - Amy Lam 03/28/2003 15:48 .. RE: New Version - Zongyou Guo 03/28/2003 10:48 .. RE: New Version - Amy Lam 03/27/2003 18:37 .. New Version - Zongou Guo 03/25/2003 11:08 .. Thank you - Yooni 03/13/2003 18:19 .. RE: Analyzing a non-reference sample - Amy Lam 03/12/2003 18:11 .. Analyzing a non-reference sample - Michael Ringler 03/04/2003 17:11 .. RE: hyperlinks - Amy Lam 03/04/2003 12:04 .. hyperlinks - Dedra 02/26/2003 14:44 .. Thank you - Angela 02/25/2003 12:40 .. RE: Request password - Amy Lam 02/24/2003 22:09 .. Request password - Kimberly Munson 02/18/2003 14:19 .. RE: Prediction of an independent set - Amy Lam 02/18/2003 14:08 .. RE: Truncation and Class Comparison - Amy Lam 02/18/2003 14:01 .. RE: class comparisons - Amy Lam 02/18/2003 13:48 .. RE: P-value - Amy Lam 02/13/2003 12:16 .. Prediction of an independent set - Chris Man 02/10/2003 19:24 .. Truncation and Class Comparison - Chris Coldren 02/05/2003 10:44 .. class comparisons - Angela 02/05/2003 10:43 .. P-value - Angela Serrani 02/04/2003 18:13 .. RE: Can I run BRB on mac? - Amy Lam 02/04/2003 14:40 .. Can I run BRB on mac? - Haiqing Fu 01/28/2003 13:46 .. RE: Error running phenotype averages - Amy Lam 01/28/2003 12:31 .. Missing Values - Andy Snyder 01/27/2003 15:17 .. please share result from joshua's e - angela serrani 01/23/2003 20:03 .. RE: correlation metric - Amy Lam 01/23/2003 20:02 .. RE: Nonmissing values?? - Amy Lam 01/23/2003 17:18 .. class comparisons - Angela Serrani 01/23/2003 06:09 .. correlation metric - Iris van Staveren 01/21/2003 09:29 .. run-time error - Iris van Staveren 01/15/2003 11:58 .. Nonmissing values?? - Eric Tremblay 01/14/2003 14:06 .. RE: Error running phenotype averages - Amy Lam 01/14/2003 14:03 .. RE: downloading problems - Amy Lam 01/10/2003 15:46 .. Error running phenotype averages - Joshua Scheys 01/09/2003 15:24 .. downloading problems - Angela Serrani 01/09/2003 10:27 .. RE: Help with error message - Amy Lam 01/08/2003 16:59 .. Help with error message - Patrick Gaffney 12/23/2002 17:53 .. RE: distributed data...how to..? - Amy Lam 12/20/2002 07:13 .. distributed data...how to..? - Manuel Fernandez 12/18/2002 10:54 .. RE: gene screening on which arrays - Amy Lam 12/17/2002 16:25 .. gene screening on which arrays - Chris Coldren 12/03/2002 17:07 .. RE: Sample comparsion method - Amy Lam 11/26/2002 15:53 .. Formula Array property - sara ek 11/22/2002 13:15 .. Sample comparsion method - Tin Lap, Lee 11/20/2002 12:06 .. RE: R 1.6.1? - Amy Lam 11/19/2002 13:09 .. R 1.6.1? - BC THOMAS 11/18/2002 14:08 .. RE: beginner's problem - Amy Lam 11/13/2002 08:33 .. beginner's problem - Amy Kable 11/07/2002 14:49 .. RE: Legend in MDS - Amy Lam 11/06/2002 17:10 .. Legend in MDS - Chris Coldren 11/04/2002 12:26 .. direct comparison w/ 2-color arrays - Brynn Jones 10/24/2002 13:24 .. RE: identifying target genes - Amy Lam 10/23/2002 15:19 .. RE: Questions about the norm,filters..? - Amy Lam 10/21/2002 14:15 .. identifying target genes - Adrian F. Gombart 10/21/2002 12:56 .. Questions about the norm,filters..? - Jin Song 10/17/2002 17:30 .. RE: RunFtest module? - Amy Lam 10/17/2002 15:32 .. RE: where is regsvr32.dll - Amy Lam 10/16/2002 12:15 .. where is regsvr32.dll - Zheng Jin Tu 10/09/2002 18:25 .. RE: RunFtest module? - Amy Lam 10/04/2002 16:55 .. RunFtest module? - jin 10/01/2002 18:55 .. RE: replicates - Amy Lam 09/30/2002 14:56 .. RunFTests module - Jin Song 09/26/2002 13:12 .. replicates - Adrian Gombart 09/17/2002 14:29 .. New email address - Amy Lam 09/11/2002 10:38 .. RE: Bug in 'MatchGenes' module - Amy Lam 09/10/2002 23:11 .. Bug in 'MatchGenes' module - Carleton Garrett 09/04/2002 20:47 .. RE: ?Any recommendations re databases - Amy Lam 09/04/2002 20:37 .. RE: R 1.5.1 already installed - Amy Lam 08/31/2002 14:34 .. ?Any recommendations re databases - Carleton Garrett 08/31/2002 14:04 .. R 1.5.1 already installed - Carleton Garrett 08/30/2002 20:11 .. Uploaded version 2.1c - bug fixes - Amy Lam 08/28/2002 14:15 .. RE: classification of Affy data - Amy Peng 08/28/2002 14:00 .. RE: Loading Affy text files - Amy Peng 08/21/2002 12:48 .. classification of Affy data - Steve Head 08/21/2002 10:10 .. Loading Affy text files - Steve Head 08/06/2002 12:10 .. RE: Skip header lines. Duplicate spots. - Amy Peng 08/06/2002 02:08 .. Skip header lines. Duplicate spots. - Kieran Holland 08/06/2002 01:30 .. Skip header lines. Duplicate spots. - Kieran Holland 07/23/2002 17:32 .. RE: Pin-tip Normalization - Amy Peng 07/18/2002 14:29 .. Pin-tip Normalization - Kin Chan 07/03/2002 12:49 .. RE: How do I load Affymetrix data? - Rich Simon 07/03/2002 12:11 .. Response To Several Questions - Rich Simon 07/03/2002 12:08 .. Several Questions - Dan Xi 06/24/2002 16:06 .. RE: How do I load Affymetrix data? - Bill Orr 05/17/2002 12:33 .. Analysis of Time Series - Richard Simon D.Sc. 05/06/2002 15:35 .. Multidimensional scaling tool fixed - Amy Peng 05/03/2002 19:02 .. New: Version 2.0-d.1 - Amy Peng 04/19/2002 11:40 .. ALL USERS - PLEASE READ!!! - Amy Peng 02/26/2002 12:34 .. Bug fix - horizontally stacked data - Amy Peng 02/22/2002 19:54 .. affy 5.0 software data - Mark Wurfel 02/20/2002 17:54 .. Filtering - Patrick Gaffney MD 02/14/2002 11:06 .. Office XP & Windows2000 - Amy Peng 02/11/2002 16:27 .. Array Tools Add-ins - Claudio D'Ambrosio, M.D. 09/05/2001 10:15 .. RE: How do I load Affymetrix data? - Amy Peng 07/17/2001 12:31 .. RE: Affymetrix data loading - Amy Peng 07/13/2001 10:58 .. Affymetrix data loading - Yang Tang 06/22/2001 14:52 .. RE: Normalization - Amy Peng 06/20/2001 15:03 .. Normalization - Jordan Abbott 05/29/2001 12:44 .. Entering reverse fluor arrays - Amy Peng 05/15/2001 10:09 .. Summary of Analysis Tools - Rich Simon 04/24/2001 16:43 .. Input all genes on array - Rich Simon 04/23/2001 17:00 .. Welcome to the message board! - Dr. Richard Simon Click and drag with your mouse to select multiple messages

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